You are here : Home > Research Centers and Units > Genoscope > UMR8030 > Bioinformatics analyses for genomics and metabolism

Laboratory

Bioinformatics analyses for genomics and metabolism

Ongoing projects and contracts


Published on 8 June 2020
Projets et contrats en cours

SESAM:  Symbiotic signal exchanges:  analysis of the molecular mechanisms of Nod-independent nitrogen-fixing symbiotics (ANR Blanc 2011-2014)

Role:  partner and head of the Bioinformatics WP (coordinator:  C. Branger, INSERM U722, Paris)


SYNBIOWATCH:  Development of a Web Application for Visualization of High-Throughput Sequencing Infectious Metagenomic Data (NRBC transverse program of the CEA 2011-2014)

Role:  project leader
Partners:  Marc Eloit, Institut Pasteur – Stéphane Gazut, CEA/DRT/LIST


REPLICOLSCOPE:  Contribution of the sequencing of plasmids bearing extended-spectrum β‑lactamases in Escherichia coli and elucidation of their current emergence (ANR GENOM 2011-2014)

Role:  partner and head of the bioinformatics WP (coordinator:  C. Branger, INSERM U722, Paris)


VIBRIOGEN:  Pathogenic vibriones of marine invertebrates:  a new look at virulence and the gene reservoirs enabling adaptation to the ecological niche (ANR Blanc 2011-2015)

Role:  partner and head of the bioinformatics WP (coordinator:  F. Le Roux, CNRS-UPMC and Ifremer, Station Biologique de Roscoff)


SHAPE:  Design of new rhizobia through experimental evolution:  toward elucidation of the adaptation of bacteria to the plant environment (ANR BioAdapt 2012-2016)

Role:  partner and head of the bioinformatics WP (coordinator:  F. Le Roux, CNRS-UPMC and Ifremer, Station Biologique de Roscoff)


BugInACell:  Intracellular accommodation of nitrogen-fixing symbiotic bacteria (ANR Blanc 013-2017)

Role:  partner and head of the bioinformatics WP (coordinator:  P. Mergaert CNRS, ISV, Gif/Yvette)


BLUE ENZYMES:  Discovery of new enzymes for the exploitation of algal biomass (ANR 'Food safety and demographic challenge' 2014-2018)

Role:  partner and head of the bioinformatics WP (coordinator:  G. Michel UMR8227, Station Biologique de Roscoff)


France Génomique (FG) - Methodological developments for work package 2.7.2 of FG:  annotation and analysis of metagenomes (2012-2016)

Role:  head of development, discussion with the bioinformatics platforms members of WP2.7.2 of FG


Institut Français de Bioinformatique (IFB) – Methodological development for the theme 'Microbial bio-informatics', IFB (2013-2016)

Role:  head of development, discussion with the partner bioinformatics platforms of the theme 'Microbial bioinformatics', IFB and IFB-core


MOPAD Microorganisms for a sustainable agriculture (BPI project in partnership with LIMAGRAIN & BIOVITIS, Sept. 2014-2017)

Role:  partner and head of the bioinformatics WPs (coordinator:  Damien Grizard, Biovitis)

Contract with DANONE RESEARCH (since 2010):  setup and maintenance of a MicroScope organization dedicated to the analysis of genomes of interest to Danone Research.