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VIRUSCAN

Viral infections diagnosis demands novel, cheaper, rapid technologies to overcome today’s constraints. The current gold standard for diagnosis of viral infections is based on pathogen-targeted nucleic acid identification, which cannot discern infectious stages from latent ones and demands time consuming adjustments, when mutations occur or new emerging viruses need to be included in diagnostic protocols. Recently, optomechanics has been implemented in fundamental developments in physics (gravitational wave detection, mechanical quantum ground states), but it has not yet delivered its full application potential.



Publié le 6 mai 2021



Optomechanics for virology


Viral infections diagnosis demands novel, cheaper, rapid technologies to overcome today’s constraints. The current gold standard for diagnosis of viral infections is based on pathogen-targeted nucleic acid identification, which cannot discern infectious stages from latent ones and demands time consuming adjustments, when mutations occur or new emerging viruses need to be included in diagnostic protocols. Recently, optomechanics has been implemented in fundamental developments in physics (gravitational wave detection, mechanical quantum ground states), but it has not yet delivered its full application potential.





 

Starting date : Nov. 2016 > Oct. 2021 

Lifetime: 60 months


Program in support : Call H2020 - FETPROACT-01-2016, Disruptive information technologies /Hybrid opto-electro-mechanical devices at the nanoscale


 

Status project : In progress


CEA-Leti's contact :

Aurélie Thuaire


 

Project Coordinator: CSIC (SP)

Partners:  

  • DE: Heinrich Pette Institute - Leibniz Institute for Experimental Virology (HPI)
  • ES: Agencia Consejo Superior de Investigaciones Cientificas (CSIC), Servicio Madrileno de Salud (SERMAS)
  • FR: CEA-Leti, Université Paris Diderot (UPD)
  • GR: Fasmatech Science and Technology SA
  • NL: Nederlandse organistie voor toegepast natuurwetenschappelijk onderzoeck (TNO), Rijksuniversiteit Groningen (RUG)

Target market: n/a



Publications:

  • «Anticipating Cutoff Diameters in Deterministic Lateral
    Displacement (DLD) Microfluidic Devices for an Optimized
    Particle Separation», E. Pariset, C. Pudda, F. Boizot,
    N. Verplanck, J. Berthier, A. Thuaire, and V. Agache, Small,
    Volume 13, Issue 37, October 4, 2017.

  • «Separation of Biological Particles in a Modular Platform
    of Cascaded Deterministic Lateral Displacement Modules»,
    E. Pariset , C. Parent, Y. Fouillet, F. Boizot, N. Verplanck,
    F. Revol-Cavalier, A.Thuaire & V. Agache, Scientific Reports,
    8:17762, 2018.



Investment:  € 7.14 m.

EC Contribution€ 7.14 m.



Website


Stakes

  • CEA-Leti is in charge of developing a disposable sample preparation module based on passive microfluidics in order to isolate and concentrate virus particles from a complex biofluid, such as plasma or serum, upstream to the nano-ESI and analysis chain. During the first 2 years of the VIRUSCAN project, we have developed a first prototype for the sample preparation module. Among the main achievements, we can highlight:
    Development of a first fluidic cartridge ensuring management of both fluidic and pneumatic circuits, and demonstration of a first set-up allowing progressive sorting of biological components (red blood cells and bacteria) from a complex biofluid using series-connected DLD modules
    Design and fabrication of a set of DLD devices with theoretical critical diameters suited to the viruses identified in the project. These DLD devices have been characterized with fluorescent polystyrene beads as a first model. We have evaluated their critical diameter and recovery rate. We have also tested the DLD devices with red blood cells as a biological particle model. Results are in close agreement with expected the performance characteristics for larger modules (up to structures with 5μm pillar diameter and inter-spacing gap, corresponding to a critical diameter of ~1μm). A hydraulic resistance model has been developed for smaller modules to optimize DLD geometrical parameters. A new DLD set has been designed and is under fabrication for this new module; it is designed to receive a higher flow rate and reduce sample processing time
    Identification of a specific module for preparing the virus nebulization step, i.e. concentration of sorted viruses and option to contain them in an easy-to-nebulize solvent (buffer exchange function). Among several exploratory designs, two have been selected and fabricated, and are being characterized.

OBJECTIVES

  • VIRUSCAN aims to apply cutting edge optomechanical developments to the biosensing and diagnostic fields and create a new interdisciplinary research community for advancing optomechanics, nanoelectromechanics, native mass spectrometry and biophysics towards clinical applications. VIRUSCAN will provide novel technology capable of identifying viral particles and assessing their infective potential through characterization of two physical parameters: mass and stiffness. Viral particle stiffness has been recently understood to act as a regulator of infectivity at different stages of the virus life cycle. Parallel advances in nanoelectromechanical systems have recently demonstrated that stiffness and mass information provided by nanoscale adsorbates can be extricated. Targeting intrinsic physical properties of viral particles will allow development of an open platform to tackle any virus and its mutations. VIRUSCAN will have an impact at all levels: providing personalized treatment to patients, reducing the use of ineffective antibiotics, increasing safety in blood transfusions, allowing quick, trustworthy response to emergency situations (e.g. EBOLA in West Africa and ZIKA in Brazil), curtailing the spread of viral infections and reducing costs per analysis and screening of a wide range of pathogens.


IMPACT

  • This project is an opportunity for Europe to develop a new technology, namely a nanoscale fluidic sorting module, which requires a combination of skills and technical resources including silicon technology, biology, and microfluidics. Initial results are very encouraging, which has strengthened cross-fertilization between the partners and with the scientific community.