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Scientific publications


Epigenetic and Environment​ Laboratory

Publications

Published on 21 June 2018
  
Circulating miRNAs as Biomarker in Cancer
Andersen GB and Tost J
Recent Results in Cancer Research 215 (), 277-298, 2020
Demethylation by low-dose 5-aza-2'-deoxycytidine impairs 3D melanoma invasion partially through miR-199a-3p expression revealing the role of this miR in melanoma
Desjobert C, Carrier A, Delmas A, Marzese DM, Daunay A, Busato F, Pillon A, Tost J, Riond J, Favre G, Etievant C and Arimondo PB
Deregulation of microRNA expression in monocytes and CD4(+) T lymphocytes from patients with axial spondyloarthritis
Fogel O, Bugge Tinggaard A, Fagny M, Sigrist N, Roche E, Leclere L, Deleuze JF, Batteux F, Dougados M, Miceli-Richard C and Tost J
Gata3 hypermethylation and Foxp3 hypomethylation are associated with sustained protection and bystander effect following epicutaneous immunotherapy in peanut-sensitized mice
Mondoulet L, Dioszeghy V, Busato F, Plaquet C, Dhelft V, Bethune K, Leclere L, Daviaud C, Ligouis M, Sampson H, Dupont C and Tost J
TNFR2 associates with FoxP3 stability and identifies asubset of regulatory T cells that are specifically expanded by anti-TNF treatments in rheumatoid arthritis
Santinon F, Batignes M, Mebrek M, Biton J, Gaelle C, Herve R, Lemeiter D, Breckler M, Busato F, Tost J, Ziol M, Boissier MC, Decker P, Semerano L and Bessis N
Loss of fragile X mental retardation protein precedes Lewy pathology in Parkinson's disease
Tan Y, Sgobio C, Arzberger T, Machleid F, Tang Q, Findeis E, Tost J, Chakroun T, Gao P, Hollerhage M, Botzel K, Herms J, Hoglinger G and Koeglsperger T
Development of high-resolution melting analysis for ABCB1 promoter methylation: Clinical consequences in breast and ovarian carcinoma
Vaclavikova R, Klajic J, Brynychova V, Elsnerova K, Alnaes GIG, Tost J, Kristensen VN, Rob L, Kodet R, Skapa P, Mrhalova M and Soucek P
Pregnancy exposure to atmospheric pollution and meteorological conditions and placental DNA methylation
Abraham E, Rousseaux S, Agier L, Giorgis-Allemand L, Tost J, Galineau J, Hulin A, Siroux V, Vaiman D, Charles MA, Heude B, Forhan A, Schwartz J, Chuffart F, Bourova-Flin E, Khochbin S, Slama R and Lepeule J
A Summary of the Biological Processes, Disease-Associated Changes, and Clinical Applications of DNA Methylation
Andersen GB and Tost J
miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts
Andersen GB, Knudsen A, Hager H, Hansen LL and Tost J
Quantitative DNA Methylation Analysis at Single-Nucleotide Resolution by Pyrosequencing(R)
Busato F, Dejeux E, El Abdalaoui H, Gut IG and Tost J
Whole-Genome Bisulfite Sequencing Using the Ovation(R) Ultralow Methyl-Seq Protocol
Daviaud C, Renault V, Mauger F, Deleuze JF and Tost J
Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution
Kernaleguen M, Daviaud C, Shen Y, Bonnet E, Renault V, Deleuze JF, Mauger F and Tost J
White Blood Cell BRCA1 Promoter Methylation Status and Ovarian Cancer Risk
Lonning PE, Berge EO, Bjornslett M, Minsaas L, Chrisanthar R, Hoberg-Vetti H, Dulary C, Busato F, Bjorneklett S, Eriksen C, Kopperud R, Axcrona U, Davidson B, Bjorge L, Evans DG, Howell A, Salvesen HB, Janszky I, Hveem K, Romundstad PR, Vatten LJ, Tost J, Dorum A and Knappskog S
Dynamic changes of DNA methylation and lung disease in cystic fibrosis: lessons from a monogenic disease
Magalhaes M, Tost J, Pineau F, Rivals I, Busato F, Alary N, Mely L, Leroy S, Murris M, Caimmi D, Claustres M, Chiron R and Sario A
Enrichment of methylated molecules using enhanced-ice-co-amplification at lower denaturation temperature-PCR (E-ice-COLD-PCR) for the sensitive detection of disease-related hypermethylation
Mauger F, Kernaleguen M, Lallemand C, Kristensen VN, Deleuze JF and Tost J
A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes
Perron G, Jandaghi P, Solanki S, Safisamghabadi M, Storoz C, Karimzadeh M, Papadakis AI, Arseneault M, Scelo G, Banks RE, Tost J, Lathrop M, Tanguay S, Brazma A, Huang S, Brimo F, Najafabadi HS and Riazalhosseini Y
Consequences of VHL Loss on Global DNA Methylome
Robinson CM, Lefebvre F, Poon BP, Bousard A, Fan X, Lathrop M, Tost J, Kim WY, Riazalhosseini Y and Ohh M
Methylation of imprinted IGF2 regions is associated with total, visceral, and hepatic adiposity in postmenopausal women
Song MA, Ernst T, Tiirikainen M, Tost J, Wilkens LR, Chang LD, Kolonel LN, Le Marchand L and Lim U
Epigenetics in Forest Trees: State of the Art and Potential Implications for Breeding and Management in a Context of Climate Change
Sow MD, Allona I, Ambroise C, Conde D, Fichot R, Gribkova S, Jorge V, Le-Provost G, Paques L, Plomion C, Salse J, Sanchez-Rodriguez L, Segura V, Tost J and Maury S
A translational perspective on epigenetics in allergic diseases
Tost J
Epigenetic plasticity of eosinophils and other immune cell subsets in childhood asthma
Tost J
Twin DNA methylation profiling reveals flare-dependent interferon signature and B-cell promoter hypermethylation in systemic lupus erythematosus
Ulff-Moller CJ, Asmar F, Liu Y, Svendsen AJ, Busato F, Gronbaek K, Tost J and Jacobsen S
Deregulation of microRNA expression in purified T and B lymphocytes from patients with primary Sjogren's syndrome
Wang-Renault SF, Boudaoud S, Nocturne G, Roche E, Sigrist N, Daviaud C, Tinggaard AB, Renault V, Deleuze JF, Mariette X and Tost J
Epigenome-wide DNA methylation profiling in Progressive Supranuclear Palsy reveals major changes at DLX1
Weber A, Schwarz SC, Tost J, Trumbach D, Winter P, Busato F, Tacik P, Windhorst AC, Fagny M, Arzberger T, McLean C, van Swieten JC, Schwarz J, Vogt Weisenhorn D, Wurst W, Adhikary T, Dickson DW, Hoglinger GU and Muller U
Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma
Arseneault M, Monlong J, Vasudev NS, Laskar RS, Safisamghabadi M, Harnden P, Egevad L, Nourbehesht N, Panichnantakul P, Holcatova I, Brisuda A, Janout V, Kollarova H, Foretova L, Navratilova M, Mates D, Jinga V, Zaridze D, Mukeria A, Jandaghi P, Brennan P, Brazma A, Tost J, Scelo G, Banks RE, Lathrop M, Bourque G and Riazalhosseini Y
DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival
Fleischer T, Klajic J, Aure MR, Louhimo R, Pladsen AV, Ottestad L, Touleimat N, Laakso M, Halvorsen AR, Grenaker Alnaes GI, Riis ML, Helland A, Hautaniemi S, Lonning PE, Naume B, Borresen-Dale AL, Tost J and Kristensen VN
DNA methylation at enhancers identifies distinct breast cancer lineages
Fleischer T, Tekpli X, Mathelier A, Wang S, Nebdal D, Dhakal HP, Sahlberg KK, Schlichting E, Borresen-Dale AL, Borgen E, Naume B, Eskeland R, Frigessi A, Tost J, Hurtado A and Kristensen VN
Epigenetic Changes in Chronic Inflammatory Diseases
Fogel O, Richard-Miceli C and Tost J
Genome-Wide Methylation Analysis Identifies Specific Epigenetic Marks In Severely Obese Children
Fradin D, Boelle PY, Belot MP, Lachaux F, Tost J, Besse C, Deleuze JF, De Filippo G and Bougneres P
Pulmonary endothelial cell DNA methylation signature in pulmonary arterial hypertension
Hautefort A, Chesne J, Preussner J, Pullamsetti SS, Tost J, Looso M, Antigny F, Girerd B, Riou M, Eddahibi S, Deleuze JF, Seeger W, Fadel E, Simonneau G, Montani D, Humbert M and Perros F
Epigenome-wide DNA methylation analysis in siblings and monozygotic twins discordant for sporadic Parkinson's disease revealed different epigenetic patterns in peripheral blood mononuclear cells
Kaut O, Schmitt I, Tost J, Busato F, Liu Y, Hofmann P, Witt SH, Rietschel M, Frohlich H and Wullner U
Clinical value of early detection of circulating tumour DNA-BRAFV600mut in patients with metastatic melanoma treated with a BRAF inhibitor
Louveau B, Tost J, Mauger F, Sadoux A, Podgorniak MP, How-Kit A, Pages C, Roux J, Da Meda L, Lebbe C and Mourah S
COLD-PCR Technologies in the Area of Personalized Medicine: Methodology and Applications
Mauger F, How-Kit A and Tost J
Nonlethal CHRNA1-Related Congenital Myasthenic Syndrome with a Homozygous Null Mutation
Neto OA, Heise CO, Moreno CDM, Estephan ED, Mesrob L, Lechner D, Boland A, Deleuze JF, Oliveira ASB, Reed UC, Biancalana V, Laporte J and Zanoteli E
Epigenetics and allergy: from basic mechanisms to clinical applications
Potaczek DP, Harb H, Michel S, Alhamwe BA, Renz H and Tost J
aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
Renault V, Tost J, Pichon F, Wang-Renault SF, Letouze E, Imbeaud S, Zucman-Rossi J, Deleuze JF and How-Kit A
NSD1 Inactivation and SETD2 Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas
Su XP, Zhang JP, Mouawad R, Comperat E, Roupret M, Allanic F, Parra J, Bitker MO, Thompson EJ, Gowrishankar B, Houldsworth J, Weinstein JN, Tost J, Broom BM, Khayat D, Spano JP, Tannir NM and Malouf GG
Epigenetics of the immune system and alterations in inflammation and autoimmunity Foreword
Tost J, Gay S and Firestein G
Systemic epigenetic response to recombinant lentiviral vectors independent of proviral integration
Aranyi T, Stockholm D, Yao R, Poinsignon C, Wiart T, Corre G, Touleimat N, Tost J, Galy A and Paldi A
Genome-wide DNA methylation analyses in lung adenocarcinomas: Association with EGFR, KRAS and TP53 mutation status, gene expression and prognosis
Bjaanaes MM, Fleischer T, Halvorsen AR, Daunay A, Busato F, Solberg S, Jorgensen L, Kure E, Edvardsen H, Borresen-Dale AL, Brustugun OT, Tost J, Kristensen V and Helland A
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Bock C, Halbritter F, Carmona FJ, Tierling S, Datlinger P, Assenov Y, Berdasco M, Bergmann AK, Booher K, Busato F, Campan M, Dahl C, Dahmcke CM, Diep D, Fernandez AF, Gerhauser C, Haake A, Heilmann K, Holcomb T, Hussmann D, Ito M, Klaver R, Kreutz M, Kulis M, Lopez V, Nair SS, Paul DS, Plongthongkum N, Qu WJ, Queiros AC, Reinicke F, Sauter G, Schlomm T, Statham A, Stirzaker C, Strogantsev R, Urdinguio RG, Walter K, Weichenhan D, Weisenberger DJ, Beck S, Clark SJ, Esteller M, Ferguson-Smith AC, Fraga MF, Guldberg P, Hansen LL, Laird PW, Martin-Subero JI, Nygren AOH, Peist R, Plass C, Shames DS, Siebert R, Sun XG, Tost J, Walter J, Zhang K and Consortium B
GFRA3 promoter methylation may be associated with decreased postoperative survival in gastric cancer
Eftang LL, Klajic J, Kristensen VN, Tost J, Esbensen QY, Blom GP, Bukholm IRK and Bukholm G
DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis
Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, Reese SE, Markunas CA, Richmond RC, Xu CJ, Kupers LK, Oh SS, Hoyo C, Gruzieva O, Soderhal C, Salas LA, Baiz N, Zhang HM, Lepeule J, Ruiz C, Ligthart S, Wang TY, Taylor JA, Duijts L, Sharp GC, Jankipersadsing SA, Nilsen RM, Vaez A, Fallin MD, Hu DL, Litonjua AA, Fuemmeler BF, Huen K, Kere J, Kull I, Munthe-Kaas MC, Gehring U, Bustamante M, Saurel-Coubizolles MJ, Quraishi BM, Ren J, Tost J, Gonzalez JR, Peters MJ, Haberg SE, Xu ZL, van Meurs JB, Gaunt TR, Kerkhof M, Corpeleijn E, Feinberg AP, Eng C, Baccarelli AA, Neelon SEB, Bradman A, Merid SK, Bergstrom A, Herceg Z, Hernandez-Vargas H, Brunekreef B, Pinart M, Heude B, Ewart S, Yao J, Lemonnier N, Franco OH, Wu MC, Hofman A, McArdle W, Van der Vlies P, Falahi F, Gillman MW, Barcellos LF, Kumar A, Wickman M, Guerra S, Charles MA, Holloway J, Auffray C, Tiemeier HW, Smith GD, Postma D, Hivert MF, Eskenazi B, Vrijheid M, Arshad H, Anto JM, Dehghan A, Karmaus W, Annesi-Maesano I, Sunyer J, Ghantous A, Pershagen G, Hollands N, Murphy SK, DeMeo DL, Burchard EG, Ladd-Acosta C, Snieder H, Nystad W, Koppelman GH, Relton CL, Jaddoe VWV, Wilcox A, Melen E and London SJ
Sustained response to salvage therapy for dabrafenib-resistant metastatic Langerhans cell sarcoma
Lorillon G, Mourah S, Vercellino L, de Margerie-Mellon C, Pages C, Goldwirt L, Lebbe C, Tost J and Tazi A
Multiplexing of E-ice-COLD-PCR Assays for Mutation Detection and Identification
Mauger F, Daunay A, Deleuze JF, Tost J and How-Kit A
New technologies for DNA analysis - a review of the READNA Project
McGinn S, Bauer D, Brefort T, Dong LQ, Ei-Sagheer A, Elsharawy A, Evans G, Falk-Sorqvist E, Forster M, Fredriksson S, Freeman P, Freitag C, Fritzsche J, Gibson S, Gullberg M, Gut M, Heath S, Heath-Brun I, Heron AJ, Hohlbein J, Ke RQ, Lancaster O, Le Reste L, Maglia G, Marie R, Mauger F, Mertes F, Mignardi M, Moens L, Oostmeijer J, Out R, Pedersen JN, Persson F, Picaud V, Rotem D, Schracke N, Sengenes J, Stahler PF, Stade B, Stoddart D, Teng X, Veal CD, Zahra N, Bayley H, Beier M, Brown T, Dekker C, Ekstrom B, Flyvbjerg H, Franke A, Guenther S, Kapanidis AN, Kaye J, Kristensen A, Lehrach H, Mangion J, Sauer S, Schyns E, Tost J, van Helvoort J, van der Zaag PJ, Tegenfeldt JO, Brookes AJ, Mir K, Nilsson M, Willcocks JP and Gut IG
Parental vitamin D deficiency during pregnancy is associated with increased blood pressure in offspring via Panx1 hypermethylation
Meems LMG, Mahmud H, Buikema H, Tost J, Michel S, Takens J, Verkaik-Schakel RN, Vreeswijk-Baudoin I, Mateo-Leach IV, van der Harst P, Plosch T and de Boer RA
Overlap between differentially methylated DNA regions in blood B lymphocytes and genetic at-risk loci in primary Sjogren's syndrome
Miceli-Richard C, Wang-Renault SF, Boudaoud S, Busato F, Lallemand C, Bethune K, Belkhir R, Nocturne G, Mariette X and Tost J
Recurrent NRAS mutations in pulmonary Langerhans cell histiocytosis
Mourah S, How-Kit A, Meignin V, Gossot D, Lorillon G, Bugnet E, Mauger F, Lebbe C, Chevret S, Tost J and Tazi A
Current and Emerging Technologies for the Analysis of the Genome-Wide and Locus-Specific DNA Methylation Patterns
Tost J
Engineering of the epigenome: synthetic biology to define functional causality and develop innovative therapies
Tost J
Follow the trace of death: methylation analysis of cell-free DNA for clinical applications in non-cancerous diseases
Tost J
The clinical potential of Enhanced-ice-COLD-PCR
Tost J
Hypoxia inducible factor-1 mediates the expression of the immune checkpoint HLA-G in glioma cells through hypoxia response element located in exon 2
Yaghi L, Poras I, Simoes RT, Donadi EA, Tost J, Daunay A, de Almeida BS, Carosella ED and Moreau P
Heterogeneous DNA Methylation Patterns in the GSTP1 Promoter Lead to Discordant Results between Assay Technologies and Impede Its Implementation as Epigenetic Biomarkers in Breast Cancer
Alnaes GIG, Ronneberg JA, Kristensen VN and Tost J
Improved reproducibility in genome-wide DNA methylation analysis for PAXgene-fixed samples compared with restored formalin-fixed and paraffin-embedded DNA
Andersen GB, Hager H, Hansen LL and Tost J
Exhaustive methylation analysis revealed uneven profiles of methylation at IGF2/ICR1/H19 11p15 loci in Russell Silver syndrome
Azzi S, Steunou V, Tost J, Rossignol S, Thibaud N, Das Neves C, Le Jule M, Habib WA, Blaise A, Koudou Y, Busato F, Le Bouc Y and Netchine I
Identification of Susceptibility Genes for Peritoneal, Ovarian, and Deep Infiltrating Endometriosis Using a Pooled Sample-Based Genome-Wide Association Study
Borghese B, Tost J, de Surville M, Busato F, Letourneur F, Mondon F, Vaiman D and Chapron C
Clonogenic Cell Subpopulations Maintain Congenital Melanocytic Nevi
Charbel C, Fontaine RH, Kadlub N, Coulomb-L'Hermine A, Rouille T, How-Kit A, Moguelet P, Tost J, Picard A, Aractingi S and Guegan S
Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants
How-Kit A, Daunay A, Mazaleyrat N, Busato F, Daviaud C, Teyssier E, Deleuze JF, Gallusci P and Tost J
DNA methylation profiles distinguish different subtypes of gastroenteropancreatic neuroendocrine tumors
How-Kit A, Dejeux E, Dousset B, Renault V, Baudry M, Terris B and Tost J
A DEMETER-like DNA demethylase governs tomato fruit ripening
Liu RE, How-Kit A, Stammitti L, Teyssier E, Rolin D, Mortain-Bertrand A, Halle S, Liu MC, Kong JH, Wu CQ, Degraeve-Guibault C, Chapman NH, Maucourt M, Hodgman TC, Tost J, Bouzayen M, Hong Y, Seymour GB, Giovannoni JJ and Gallusci P
Comprehensive evaluation of methods to isolate, quantify, and characterize circulating cell-free DNA from small volumes of plasma
Mauger F, Dulary C, Daviaud C, Deleuze JF and Tost J
Dramatic transient improvement of metastatic BRAF(V600E)-mutated Langerhans cell sarcoma under treatment with dabrafenib
Mourah S, Lorillon G, Meignin V, Vercellino L, de Margerie-Mellon C, Pages C, Goldwirt L, How-Kit A, Tost J, Lebbe C and Tazi A
Copy number variations alter methylation and parallel IGF2 overexpression in adrenal tumors
Nielsen HM, How-Kit A, Guerin C, Castinetti F, Vollan HKM, De Micco C, Daunay A, Taieb D, Van Loo P, Besse C, Kristensen VN, Hansen LL, Barlier A, Sebag F and Tost J
Consequences of combining siRNA-mediated DNA methyltransferase 1 depletion with 5-aza-2 '-deoxycytidine in human leukemic KG1 cells
Vispe S, Deroide A, Davoine E, Desjobert C, Lestienne F, Fournier L, Novosad N, Breand S, Besse J, Busato F, Tost J, De Vries L, Cussac D, Riond J and Arimondo PB
Upregulation of Membrane-Bound CD40L on CD4(+) T cells in Women with Primary Sjogren's Syndrome
Belkhir R, Gestermann N, Koutero M, Seror R, Tost J, Mariette X and Miceli-Richard C
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Chalhoub B, Denoeud F, Liu SY, Parkin IAP, Tang HB, Wang XY, Chiquet J, Belcram H, Tong CB, Samans B, Correa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao MX, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan GY, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VHD, Chalabi S, Hu Q, Fan CC, Tollenaere R, Lu YH, Battail C, Shen JX, Sidebottom CHD, Wang XF, Canaguier A, Chauveau A, Berard A, Deniot G, Guan M, Liu ZS, Sun FM, Lim YP, Lyons E, Town CD, Bancroft I, Wang XW, Meng JL, Ma JX, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou YM, Hua W, Sharpe AG, Paterson AH, Guan CY and Wincker P
NRAS Mutation Is the Sole Recurrent Somatic Mutation in Large Congenital Melanocytic Nevi
Charbel C, Fontaine RH, Malouf GG, Picard A, Kadlub N, El-Murr N, How-Kit A, Su XP, Coulomb-L'Hermine A, Tost J, Mourah S, Aractingi S and Guegan S
A novel tumor suppressor function of Kindlin-3 in solid cancer
Djaafri I, Khayati F, Menashi S, Tost J, Podgorniak MP, Sadoux A, Daunay A, Teixeira L, Soulier J, Idbaih A, Setterblad N, Fauvel F, Calvo F, Janin A, Lebbe C and Mourah S
Integrated analysis of high- resolution DNA methylation profiles, gene expression, germline genotypes and clinical end points in breast cancer patients
Fleischer T, Edvardsen H, Solvang HK, Daviaud C, Naume B, Borresen-Dale AL, Kristensen VN and Tost J
Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis
Fleischer T, Frigessi A, Johnson KC, Edvardsen H, Touleimat N, Klajic J, Riis MLH, Haakensen VD, Warnberg F, Naume B, Helland A, Borresen-Dale AL, Tost J, Christensen BC and Kristensen VN
Differential DNA methylation analysis of breast cancer reveals the impact of immune signaling in radiation therapy
Halvorsen AR, Helland A, Fleischer T, Haug KM, Alnaes GIG, Nebdal D, Syljuasen RG, Touleimat N, Busato F, Tost J, Saetersdal AB, Borresen-Dale AL, Kristensen V and Edvardsen H
Ultrasensitive detection and identification of BRAF V600 mutations in fresh frozen, FFPE, and plasma samples of melanoma patients by E-ice-COLD-PCR
How-Kit A, Lebbe C, Bousard A, Daunay A, Mazaleyrat N, Daviaud C, Mourah S and Tost J
DNA Methylation Status of Key Cell-Cycle Regulators Such as CDKNA2/p16 and CCNA1 Correlates with Treatment Response to Doxorubicin and 5-Fluorouracil in Locally Advanced Breast Tumors
Klajic J, Busato F, Edvardsen H, Touleimat N, Fleischer T, Bukholm I, Borresen-Dale AL, Lonning PE, Tost J and Kristensen VN
Increased regulatory T-cell numbers are associated with farm milk exposure and lower atopic sensitization and asthma in childhood
Lluis A, Depner M, Gaugler B, Saas P, Casaca VI, Raedler D, Michel S, Tost J, Liu J, Genuneit J, Pfefferle P, Roponen M, Weber J, Braun-Fahrlander C, Riedler J, Lauener R, Vuitton DA, Dalphin JC, Pekkanen J, von Mutius E, Schaub B and Protection Against Allergy Study R
In Utero Undernutrition in Male Mice Programs Liver Lipid Metabolism in the Second-Generation Offspring Involving Altered Lxra DNA Methylation
Martinez D, Pentinat T, Ribo S, Daviaud C, Bloks VW, Cebria J, Villalmanzo N, Kalko SG, Ramon-Krauel M, Diaz R, Plosch T, Tost J and Jimenez-Chillaron JC
A revisit of high collision energy effects on collision-induced dissociation spectra using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry (MALDI-LIFT-TOF/TOF): application to the sequencing of RNA/DNA chimeras
Mauger F, Tabet JC and Gut IG
Synergistic chromatin repression of the tumor suppressor gene RARB in human prostate cancers
Moison C, Assemat F, Daunay A, Tost J, Guieysse-Peugeot AL and Arimondo PB
No evidence for copy number and methylation variation in H19 and KCNQ10T1 imprinting control regions in children born small for gestational age
Murphy R, Thompson JMD, Tost J, Mitchell EA and Auckland Birthweight C
Altered gene expression in human placentas after IVF/ICSI
Nelissen ECM, Dumoulin JCM, Busato F, Ponger L, Eijssen LM, Evers JLH, Tost J and van Montfoort APA
DNMT3L interacts with transcription factors to target DNMT3L/DNMT3B to specific DNA sequences: Role of the DNMT3L/DNMT3B/p65-NF kappa B complex in the (de-)methylation of TRAF1
Pacaud R, Sery Q, Oliver L, Vallette FM, Tost J and Cartron PF
The 5p12 breast cancer susceptibility locus affects MRPS30 expression in estrogen-receptor positive tumors
Quigley DA, Fiorito E, Nord S, Van Loo P, Alnaes GG, Fleischer T, Tost J, Vollan HKM, Tramm T, Overgaard J, Bukholm IR, Hurtado A, Balmain A, Borresen-Dale AL and Kristensen V
A polymorphism in the T(H)2 locus control region is associated with changes in DNA methylation and gene expression
Schieck M, Sharma V, Michel S, Toncheva AA, Worth L, Potaczek DP, Genuneit J, Kretschmer A, Depner M, Dalphin JC, Riedler J, Frei R, Pekkanen J, Tost J and Kabesch M
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
Aure MR, Leivonen SK, Fleischer T, Zhu Q, Overgaard J, Alsner J, Tramm T, Louhimo R, Alnaes GIG, Perala M, Busato F, Touleimat N, Tost J, Borresen-Dale AL, Hautaniemi S, Troyanskaya OG, Lingjaerde OC, Sahlberg KK and Kristensen VN
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling
Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Vollan HKM, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Borresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA and Margolin AA
Sensitive Detection of KRAS Mutations Using Enhanced-ice-COLD-PCR Mutation Enrichment and Direct Sequence Identification
Kit AH, Mazaleyrat N, Daunay A, Nielsen HM, Terris B and Tost J
Quantitative DNA methylation analyses reveal stage dependent DNA methylation and association to clinico-pathological factors in breast tumors
Klajic J, Fleischer T, Dejeux E, Edvardsen H, Warnberg F, Bukholm I, Lonning PE, Solvang H, Borresen-Dale AL, Tost J and Kristensen VN
Genome-wide association study in breast cancer survivors reveals SNPs associated with gene expression of genes belonging to MHC class I and II
Landmark-Hoyvik H, Dumeaux V, Nebdal D, Lund E, Tost J, Kamatani Y, Renault V, Borresen-Dale AL, Kristensen V and Edvardsen H
Farm exposure and time trends in early childhood may influence DNA methylation in genes related to asthma and allergy
Michel S, Busato F, Genuneit J, Pekkanen J, Dalphin JC, Riedler J, Mazaleyrat N, Weber J, Karvonen AM, Hirvonen MR, Braun-Fahrlander C, Lauener R, von Mutius E, Kabesch M, Tost J and Grp PS
DNA methylation associated with polycomb repression in retinoic acid receptor beta silencing
Moison C, Senamaud-Beaufort C, Fourriere L, Champion C, Ceccaldi A, Lacomme S, Daunay A, Tost J, Arimondo PB and Guieysse-Peugeot AL
Placentas from pregnancies conceived by IVF/ICSI have a reduced DNA methylation level at the H19 and MEST differentially methylated regions
Nelissen ECM, Dumoulin JCM, Daunay A, Evers JLH, Tost J and van Montfoort APA
Germline and somatic genetic variations of TNFAIP3 in lymphoma complicating primary Sjogren's syndrome
Nocturne G, Boudaoud S, Miceli-Richard C, Viengchareun S, Lazure T, Nititham J, Taylor KE, Ma A, Busato F, Melki J, Lessard CJ, Sivils KL, Dubost JJ, Hachulla E, Gottenberg JE, Lombes M, Tost J, Criswell LA and Mariette X
Differences in Transcription Patterns between Induced Pluripotent Stem Cells Produced from the Same Germ Layer Are Erased upon Differentiation
Pirozhkova I, Barat A, Dmitriev P, Kim E, Robert T, Guegan J, Bilhou-Nabera C, Busato F, Tost J, Carnac G, Laoudj-Chenivesse D, Lipinski M and Vassetzky Y
Methylation profile of the promoter region of IRF5 in primary Sjogren's syndrome
Gestermann N, Koutero M, Belkhir R, Tost J, Mariette X and Miceli-Richard C
Complete pipeline for Infinium (R) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation
Touleimat N and Tost J