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Publications du Genoscope

Publié le 25 juin 2018
  
Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea
Arif M, Gauthier J, Sugier K, Iudicone D, Jaillon O, Wincker P, Peterlongo P and Madoui MA
Recombination and Large Structural Variations Shape Interspecific Edible Bananas Genomes
Baurens FC, Martin G, Hervouet C, Salmon F, Yohome D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N and D'Hont A
Characterization of L-Carnitine Metabolism in Sinorhizobium meliloti
Bazire P, Perchat N, Darii E, Lechaplais C, Salanoubat M and Perret A
Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways
Bourrel AS, Poirel L, Royer G, Darty M, Vuillemin X, Kieffer N, Clermont O, Denamur E, Nordmann P, Decousser J-W and Group IR
The Synthetic Microbiology Caucus: a fresh channel for exploring new ideas, challenging conventional wisdom and fostering community projects
de Lorenzo V and Marliere P
Mixotrophic protists display contrasted biogeographies in the global ocean
Faure E, Not F, Benoiston AS, Labadie K, Bittner L and Ayata SD
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica
Ferreira de Carvalho J, Lucas J, Deniot G, Falentin C, Filangi O, Gilet M, Legeai F, Lode M, Morice J, Trotoux G, Aury J-M, Barbe V, Keller J, Snowdon R, He Z, Denoeud F, Wincker P, Bancroft I, Chevre A-M and Rousseau-Gueutin M
Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.)
Gali KK, Tar'an B, Madoui MA, van der Vossen E, van Oeveren J, Labadie K, Berges H, Bendahmane A, Lachagari RVB, Burstin J and Warkentin T
Enantioselective Synthesis of D- and L-alpha-Amino Acids by Enzymatic Transamination Using Glutamine as Smart Amine Donor
Heuson E, Charmantray F, Petit JL, de Berardinis V and Gefflaut T
Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity
Karimi B, Dequiedt S, Terrat S, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Prevost-Boure NC and Ranjard L
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation
Kraiselburd I, Bruls T, Heilmann G, Kaschani F, Kaiser M and Meckenstock RU
De novo clustering of long reads by gene from transcriptomics data
Marchet C, Lecompte L, Silva CD, Cruaud C, Aury J-M, Nicolas J and Peterlongo P
The Wolbachia mobilome in Culex pipiens includes a putative plasmid
Reveillaud J, Bordenstein SR, Cruaud C, Shaiber A, Esen OC, Weill M, Makoundou P, Lolans K, Watson AR, Rakotoarivony I and Eren AM
Exploring natural biodiversity to expand access to microbial terpene synthesis
Rico J, Duquesne K, Petit JL, Mariage A, Darii E, Peruch F, de Berardinis V and Iacazio G
Towards the enzymatic formation of artificial metal base pairs with a carboxy-imidazole-modified nucleotide
Rothlisberger P, Levi-Acobas F, Sarac I, Marliere P, Herdewijn P and Hollenstein M
A gene graveyard in the genome of the fungus Podospora comata
Silar P, Dauget JM, Gautier V, Grognet P, Chablat M, Hermann-Le Denmat S, Couloux A, Wincker P and Debuchy R
De novo structure determination of 3-((3-aminopropyl)amino)-4-hydroxybenzoic acid, a novel and abundant metabolite in Acinetobacter baylyi ADP1
Thomas M, Stuani L, Darii E, Lechaplais C, Pateau E, Tabet JC, Salanoubat M, Saaidi PL and Perret A
Metagenomic Analysis of Cyanobacteria in an Oligotrophic Tropical Estuary, South Atlantic
Affe HMD, Rigonato J, Nunes JMD and Menezes M
Convergent genomic signatures of domestication in sheep and goats
Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, Joost S, Ajmone-Marsan P, Negrini R, Orlando L, Rezaei HR, Naderi S, Clarke L, Flicek P, Wincker P, Coissac E, Kijas J, Tosser-Klopp G, Chikhi A, Bruford MW, Taberlet P and Pompanon F
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, Pozniak CJ, Choulet F, Distelfeld A, Poland J, Ronen G, Sharpe AG, Pozniak C, Barad O, Baruch K, Keeble-Gagnere G, Mascher M, Ben-Zvi G, Josselin AA, Himmelbach A, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Koh C, Muehlbauer G, Pasam RK, Paux E, Rigault P, Tibbits J, Tiwari V, Spannagl M, Lang D, Gundlach H, Haberer G, Mayer KFX, Ormanbekova D, Prade V, Simkova H, Wicker T, Swarbreck D, Rimbert H, Felder M, Guilhot N, Kaithakottil G, Keilwagen J, Leroy P, Lux T, Twardziok S, Venturini L, Juhasz A, Abrouk M, Fischer I, Uauy C, Borrill P, Ramirez-Gonzalez RH, Arnaud D, Chalabi S, Chalhoub B, Cory A, Datla R, Davey MW, Jacobs J, Robinson SJ, Steuernagel B, van Ex F, Wulff BBH, Benhamed M, Bendahmane A, Concia L, Latrasse D, Alaux M, Bartos J, Bellec A, Berges H, Dolezel J, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Singh K, Valarik M, van der Vossen E, Vautrin S, Weining S, Fahima T, Glikson V, Raats D, Cihalikova J, Toegelova H, Vrana J, Sourdille P, Darrier B, Barabaschi D, Cattivelli L, Hernandez P, Galvez S, Budak H, Jones JDG, Witek K, Yu GT, Small I, Melonek J, Zhou RN, Belova T, Kanyuka K, King R, Nilsen K, Walkowiak S, Cuthbert R, Knox R, Wiebe K, Xiang DQ, Rohde A, Golds T, Cizkova J, Akpinar BA, Biyiklioglu S, Gao LL, N'Daiye A, Kubalakova M, Safar J, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Loaec M, Quesneville H, Condie J, Ens J, Maclachlan R, Tan YF, Alberti A, Aury JM, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P, Kaur G, Luo MC, Sehgal S, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS, Holusova K, Plihal O, Clark MD, Heavens D, Kettleborough G, Wright J, Balcarkova B, Hu YQ, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu JZ, Cattonaro F, Jiumeng M, Kugler K, Pfeifer M, Sandve S, Xun X, Zhan BJ, Batley J, Bayer PE, Edwards D, Hayashi S, Tulpova Z, Visendi P, Song WN, Cui LC, Du XH, Feng KW, Nie XJ, Tong W, Wang L, Iwgsc, Principal IR, Prin IW-GA, Whole-genome Sequencing A, Hi CD-bS, Whole-genome Assembly Q, Pseudomolecule A, RefSeq Genome Structure G, Automated A, Manual Gene C, Subgenome Comparative A, Transposable E, Phylogenomic A, Transcriptome Anal RNAsD, Whole-genome M, Histone Mark A, W BACCMI-B, Chromosome LTCMPM, Mapping RH, Optical M, Recombination A, Gene Family A, Family CBFG, Dehydrin Gene F, Family NLRG, Family PPRG, Prolamin Gene F, Family WAKG, Stem Solidness SQTLT, Flowering Iocus CFLCGT, Genome Size A, Micro RNAtA, Genetic Maps M, Sorting BACLC, Repository BACPBL, Repository ISD, Phys Maps BACbSA, Assembly BBS, Mapping DDDP, Mapping ALP, Mapping ASP, Wh BDBBDIB, BAC DSPM, Assembly DBS, Ass APMBS, Assembly BBS, Sequencing APMB, Sequencing BPMB, Assembly DBS, Sequencing DLPMB, Figures and Manuscript Writing T
Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters
Arsene-Ploetze F, Chiboub O, Lievremont D, Farasin J, Freel KC, Fouteau S and Barbe V
Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family
Bastard K, Isabet T, Stura EA, Legrand P and Zaparucha A
Scientific Reports 8 (), e16587, 2018
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser C, Istace B, Denis E, Dubarry M, Baurens FC, Falentin C, Genete M, Berrabah W, Chevre AM, Delourme R, Deniot G, Denoeud F, Duffe P, Engelen S, Lemainque A, Manzanares-Dauleux M, Martin G, Morice J, Noel B, Vekemans X, D'Hont A, Rousseau-Gueutin M, Barbe V, Cruaud C, Wincker P and Aury JM
Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement
Borriss R, Danchin A, Harwood CR, Medigue C, Rocha EPC, Sekowska A and Vallenet D
Extended-spectrum beta-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Branger C, Ledda A, Billard-Pomares T, Doublet B, Fouteau S, Barbe V, Roche D, Cruveiller S, Medigue C, Castellanos M, Decre D, Drieux-Rouze L, Clermont O, Glodt J, Tenaillon O, Cloeckaert A, Arlet G and Denamur E
A global ocean atlas of eukaryotic genes
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Meheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C and Wincker P
Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R and Jacques MA
Distinct Carbon Isotope Fractionation Signatures during Biotic and Abiotic Reductive Transformation of Chlordecone
Chevallier ML, Cooper M, Kummel S, Barbance A, Le Paslier D, Richnow HH, Saaidi PL and Adrian L
Parallels between experimental and natural evolution of legume symbionts
Clerissi C, Touchon M, Capela D, Tang MX, Cruveiller S, Parker MA, Moulin L, Masson-Boivin C and Rocha EPC
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhone B, Burgarella C, Dupuy C, Larmande P, Wincker P, Francois O, Sabot F and Vigouroux Y
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahe F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P and de Vargas C
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification
Desroches M, Royer G, Roche D, Mercier-Darty M, Vallenet D, Medigue C, Bastard K, Rodriguez C, Clermont O, Denamur E and Decousser JW
Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs
Dias GM, Bidault A, Le Chevalier P, Choquet G, Sarkissian CD, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V and Paillard C
Implementation of a Reductive Route of One-Carbon Assimilation in Escherichia coli through Directed Evolution
Doring V, Darii E, Yishai O, Bar-Even A and Bouzon M
RecPhyloXML: a format for reconciled gene trees
Duchemin W, Gence G, Chifolleau AMA, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davin AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szollosi G, Zhang LX, Tannier E and Daubin V
De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
Dutreux F, Da Silva C, d'Agata L, Couloux A, Gay EJ, Istace B, Lapalu N, Lemainque A, Linglin J, Noel B, Wincker P, Cruaud C, Rouxel T, Balesdent MH and Aury JM
Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution
Duval C, Thomazeau S, Drelin Y, Yepremian C, Bouvy M, Couloux A, Troussellier M, Rousseau F and Bernard C
Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains
Farhat S, Florent I, Noel B, Kayal E, Da Silva C, Bigeard E, Alberti A, Labadie K, Corre E, Aury JM, Rombauts S, Wincker P, Guillou L and Porcel BM
Neobodonids are dominant kinetoplastids in the global ocean
Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukes J and Horak A
Enzymatic Cascade Reactions for the Synthesis of Chiral Amino Alcohols from L-lysine
Fossey-Jouenne A, Vergne-Vaxelaire C and Zaparucha A
Modulation of BACE1 Activity by Chemically Modified Aptamers
Gasse C, Zaarour M, Noppen S, Abramov M, Marliere P, Liekens S, De Strooper B and Herdewijn P
Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation
Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengelle J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C and Dumas B
Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria
Grebert T, Dore H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P, Acinas SG, Kehoe DM and Garczarek L
Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia
Gully D, Czernic P, Cruveiller S, Mahe F, Longin C, Vallenet D, Francois P, Nidelet S, Rialle S, Giraud E, Arrighi JF, DasGupta M and Cartieaux F
Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters
Hajighasemi M, Tchigvintsev A, Nocek B, Flick R, Popovic A, Hai T, Khusnutdinova AN, Brown G, Xu XH, Cui H, Anstett J, Chernikova TN, Bruls T, Le Paslier D, Yakimov MM, Joachimiak A, Golyshina OV, Savchenko A, Golyshin PN, Edwards EA and Yakunin AF
An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region
Hume BCC, Ziegler M, Poulain J, Pochon X, Romac S, Boissin E, De Vargas C, Planes S, Wincker P and Voolstra CR
Methylated Nucleobases: Synthesis and Evaluation for Base Pairing In Vitro and In Vivo
Jabgunde AM, Jaziri F, Bande O, Froeyen M, Abramov M, Nguyen H, Schepers G, Lescrinier E, Pinheiro VB, Pezo V, Marliere P and Herdewijn P
Disentangling the Causes for Faster-X Evolution in Aphids
Jaquiery J, Peccoud J, Ouisse T, Legeai F, Prunier-Leterme N, Gouin A, Nouhaud P, Brisson JA, Bickel R, Purandare S, Poulain J, Battail C, Lemaitre C, Mieuzet L, Le Trionnaire G, Simon JC and Rispe C
Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework
Kanj S, Bruls T and Gazut S
Biogeography of soil bacteria and archaea across France
Karimi B, Terrat S, Dequiedt S, Saby NPA, Horriguel W, Lelievre M, Nowak V, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Maron PA, Prevost-Boure NC and Ranjard L
Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms
Kazamia E, Sutak R, Paz-Yepes J, Dorrell RG, Vieira FRJ, Mach J, Morrissey J, Leon S, Lam F, Pelletier E, Camadro JM, Bowler C and Lesuisse E
Science Advances 4 (5), eaar4536, 2018
XNA ligation using T4 DNA ligase in crowding conditions
Kestemont D, Renders M, Leonczak P, Abramov M, Schepers G, Pinheiro VB, Rozenski J and Herdewijn P
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation
Krin E, Pierle SA, Sismeiro O, Jagla B, Dillies MA, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Medigue C, Coppee JY and Mazel D
Bmc Genomics 19 (), e373, 2018
Synthesis of Branched-Chain Sugars with a DHAP-Dependent Aldolase: Ketones are Electrophile Substrates of Rhamnulose-1-phosphate Aldolases
Laurent V, Darii E, Aujon A, Debacker M, Petit JL, Helaine V, Liptaj T, Breza M, Mariage A, Nauton L, Traikia M, Salanoubat M, Lemaire M, Guerard-Helaine C and de Berardinis V
A Polymer Model for the Quantitative Reconstruction of Chromosome Architecture from HiC and GAM Data
Le Treut G, Kepes F and Orland H
Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export
Leblanc K, Queguiner B, Diaz F, Cornet V, Michel-Rodriguez M, de Madron XD, Bowler C, Malviya S, Thyssen M, Gregori G, Rembauville M, Grosso O, Poulain J, de Vargas C, Pujo-Pay M and Conan P
Diversity and evolution of the emerging Pandoraviridae family
Legendre M, Fabre E, Poirot O, Jeudy S, Lartigue A, Alempic JM, Beucher L, Philippe N, Bertaux L, Christo-Foroux E, Labadie K, Coute Y, Abergel C and Claverie JM
Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
Legras JL, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marcet-Houben M, Gabaldon T, Schuller D, Sampaio JP and Dequin S
NADPH-Auxotrophic E-coil: A Sensor Strain for Testing in Vivo Regeneration of NADPH
Lindner SN, Ramirez LC, Krusemann JL, Yishai O, Belkhelfa S, He H, Bouzon M, Doring V and Bar-Even A
Phosphonomethyl Oligonucleotides as Backbone-Modified Artificial Genetic Polymers
Liu C, Cozens C, Jaziri F, Rozenski J, Marechal A, Dumbre S, Pezo V, Marliere P, Pinheiro VB, Groaz E and Herdewijn P
A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi
Manzano-Marin A, d'acier AC, Clamens AL, Orvain C, Cruaud C, Barbe V and Jousselin E
Amphioxus functional genomics and the origins of vertebrate gene regulation
Marletaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutierrez E, Canestro C, Castro F, D'Aniello S, Ferrier DEK, Huang SF, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu AL, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernandez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gomez-Skarmeta JL and Irimia M
Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network
Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F and Bittner L
A de novo approach to disentangle partner identity and function in holobiont systems
Meng A, Marchet C, Corre E, Peterlongo P, Alberti A, Da Silva C, Wincker P, Pelletier E, Probert I, Decelle J, Le Crom S, Not F and Bittner L
GROOLS: reactive graph reasoning for genome annotation through biological processes
Mercier J, Josso A, Medigue C and Vallenet D
Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis
Monteil CL, Perriere G, Menguy N, Ginet N, Alonso B, Waisbord N, Cruveiller S, Pignol D and Lefevre CT
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Morard R, Garet-Delmas MJ, Mahe F, Romac S, Poulain J, Kucera M and de Vargas C
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsan K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Zifcakova L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P and Martin FM
Division-Based, Growth Rate Diversity in Bacteria
Nana GYG, Ripoll C, Cabin-Flaman A, Gibouin D, Delaune A, Janniere L, Grancher G, Chagny G, Loutelier-Bourhis C, Lentzen E, Grysan P, Audinot JN and Norris V
Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment
Opatovsky I, Santos-Garcia D, Ruan ZP, Lahav T, Ofaim S, Mouton L, Barbe V, Jiang JD, Zchori-Fein E and Freilich S
A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle
Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grebert T, Bouchier C, Le Panse S, Gachenot M, Rodriguez F and Garrido JL
Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites
Perchat N, Saaidi PL, Darii E, Pelle C, Petit JL, Besnard-Gonnet M, de Berardinis V, Dupont M, Gimbernat A, Salanoubat M, Fischer C and Perret A
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergstrom A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G and Schacherer J
Metabolic Recruitment and Directed Evolution of Nucleoside Triphosphate Uptake in Escherichia coli
Pezo V, Hassan C, Louis D, Sargueil B, Herdewijn P and Marliere P
Oak genome reveals facets of long lifespan
Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholome J, Faivre-Rampant P, Kohler A, Leple JC, Chantret N, Chen J, Dievart A, Alaeitabar T, Barbe V, Belser C, Berges H, Bodenes C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rue O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A and Salse J
The Rosa genome provides new insights into the domestication of modern roses
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrere S, Caissard JC, Couloux A, Cottret L, Aury JM, Szecsi J, Latrasse D, Madoui MA, Francois L, Fu XP, Yang SH, Dubois A, Piola F, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez-Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P and Bendahmane M
Gene flow contributes to diversification of the major fungal pathogen Candida albicans
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Incorporation of a minimal nucleotide into DNA
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PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
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Chitin distribution in the Oithona digestive and reproductive systems revealed by fluorescence microscopy
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The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
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Hardwood Tree Genomics: Unlocking Woody Plant Biology
Tuskan GA, Groover AT, Schmutz J, DiFazio SP, Myburg A, Grattapaglia D, Smart LB, Yin TM, Aury JM, Kremer A, Leroy T, Le Provost G, Plomion C, Carlson JE, Randall J, Westbrook J, Grimwood J, Muchero W, Jacobson D and Michener JK
Characterization of a thermotolerant ROK-type mannofructokinase from Streptococcus mitis: application to the synthesis of phosphorylated sugars
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The Ocean Gene Atlas: exploring the biogeography of plankton genes online
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Nucleic Acids Research 46 (W1), W289-W295, 2018
In Vivo Assimilation of One-Carbon via a Synthetic Reductive Glycine Pathway in Escherichia coli
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Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
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The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies
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A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
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Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas
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Integrating transcriptional activity in genome-scale models of metabolism
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Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
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Biocatalytic Approaches towards the Synthesis of Chiral Amino Alcohols from Lysine: Cascade Reactions Combining alpha-Keto Acid Oxygenase Hydroxylation with Pyridoxal Phosphate- Dependent Decarboxylation
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Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
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Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria
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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
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