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Press release | DNA | Structural biology | Molecular mechanisms

DNA repair: in-depth look at the initial stages

​A research team from the SB2SM (I2BC@Saclay), in collaboration with teams from the CNRS, SOLEIL (French synchrotron facility), University of Paris-Sud, Gustave Roussy, Aix-Marseille University and University Paul Sabatier - Toulouse III [1], has used crystallography to “photograph” the first moments of the molecular ballet that allows cells to repair their DNA. Structures of two complexes involved in radiation-induced DNA damages were published in Nature Structural & Molecular Biology on October, the 5th. Specific mutations targeting interactions identified in this study induce higher cell radiosensitivity.

Published on 8 October 2018

​Radiotherapy is a critical tool in cancer treatment. Prescribed in one in two cases (i.e. 200,000 cases per year in France), the rays used in radiotherapy destroy cancer cells by fragmenting their DNA. However, in tumours, some cells can resist treatment by repairing the breaks in their DNA. To increase the effectiveness of radiotherapy on the tumour, for instance by inhibiting DNA repair in the tumour, researchers first need to have a detailed understanding of how these repair mechanisms work.

Figure 1: Three levels of analysis of the recruitment of repair proteins on DNA breaks (Ku in purple and XLF in green. APLF is not shown for the purposes of clarity).
From left to right:
1/ accumulation of protein as a spot at the irradiation site in a cell nucleus;
2/ protein aggregates visualized under super-resolution microscopy;
3/ molecular complex characterized by X-ray crystallography. The area of interaction between Ku and XLF is shown in yellow. The DNA in brown is surrounded by the Ku ring.
© PCalsou / JBCharbonnier / CEA

​In irradiated cells, a protein complex assembles around a ring-shaped protein known as Ku, which quickly encircles the ends of DNA breaks. Through this ballet, the ends of breaks are repaired by joining together

Researchers studied the first phase of this dance, with Ku at the centre, and particularly the involvement of APLF and XLF, two proteins that work with Ku. Using X-ray crystallography to view the protein complexes at an atomic scale, they produced snapshots of interactions between Ku/APLF and between Ku/XLF. For the first time ever, these images show that each of the two partners comes into contact with Ku on distinct sites. Researchers showed that if these sites are changed, breaks are no longer properly repaired and the cells much less survive after they are irradiated.

In the long term, precise knowledge of the contact points between the DNA break repair catalysts could lead to the development of molecules that would perfectly adjust to these sites. By preventing the assembly of the repair mechanism in tumours, these molecules could potentiate radiotherapy treatments.

Figure 2: Cells containing the XLF protein marked in green (left) are irradiated by laser to create DNA breaks along thin lines. The proteins are recruited in one minute on the parallel lines drawn by the laser (right). © PCalsou / JBCharbonnier / CEA

[1] Project leaders: Institute of Integrative Biology of the Cell (I2BC), CEA Paris-Saclay, CNRS, University Paris-Sud; Institute of Molecular and Cellular Pharmacology (IPMC) ; Institute of Pharmacology and Structural Biology IPBS, CNRS, University Paul Sabatier - Toulouse III, certified team under Ligue Contre le Cancer.

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