| Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergence | Areces-Berazain F, Hinsinger DD and Strijk JS | |  | | Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads | | | | | Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA Delivery | Baladi T, Nilsson JR, Gallud A, Celauro E, Gasse C, Levi-Acobas F, Sarac I, Hollenstein MR, Dahlen A, Esbjorner EK and Wilhelmsson LM | | | | Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA | Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S and Zeppilli D | | | | Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding | Brandt MI, Trouche B, Quintric L, Gunther B, Wincker P, Poulain J and Arnaud-Haond S | | | | BoardION: real-time monitoring of Oxford Nanopore sequencing instruments | Bruno A, Aury JM and Engelen S | | | | Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea | Castelle CJ, Meheust R, Jaffe AL, Seitz K, Gong XZ, Baker BJ and Banfield JF | | | | Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity | Cheng JG, Jacquin J, Conan P, Pujo-Pay M, Barbe V, George M, Fabre P, Bruzaud S, Ter Halle A, Meistertzheim AL and Ghiglione JF | | | | Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids | Clavel P, Dumoncel J, Sarkissian CD, Seguin-Orlando A, Calviere-Tonasso L, Schiavinato S, Chauvey L, Perdereau A, Aury JM, Wincker P, Onar V, Clavel B, Lepetz S, Braga J and Orlando L | | | | The NANOTUMOR consortium - Towards the Tumor Cell Atlas | Colin F, Schauer K, Hamiche A, Martineau P, Borg JP, Bednar J, Bertolin G, Camoin L, Collette Y, Dimitrov S, Fournier I, Hyenne V, Mendoza-Parra MA, Morelli X, Ronde P, Sumara I, Tramier M, Schultz P and Goetz JG | | | | Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switch | Collins SP, Rostain W, Liao CY and Beisel CL | | | | Sequence diversity and evolution of a group of iflaviruses associated with ticks | Daveu R, Hervet C, Sigrist L, Sassera D, Jex A, Labadie K, Aury JM, Plantard O and Rispe C | | | | Microbiological versus Chemical Reductive Sulfidation: An Experimental and Theoretical Study | Della-Negra O, de Bonneville BL, Chaussonnerie S, Le Paslier D, Frison G and Saaidi PL | | | | A community perspective on the concept of marine holobionts: current status, challenges, and future directions | Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cardenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachoni CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, Lathier FH, Medina M, Marzinelli EM, Morganti TM, Pons LN, Prado S, Pintado J, Saha M, selosse MA, Skillings D, Stock W, Sunagawa S, Toulza E, Vorobev A, Leblanc C and Not F | | | | Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis | Dong N, Bandura J, Zhang ZL, Wang Y, Labadie K, Noel B, Davison A, Koene JM, Sun HS, Coutellec MA and Feng ZP | | | | Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes | Dorrell RG, Villain A, Perez-Lamarque B, de Kerdrel GA, McCallum G, Watson AK, Ait-Mohamed O, Alberti A, Corre E, Frischkorn KR, Karlusich JJP, Pelletier E, Morlon H, Bowler C and Blanc G | | | | NAD(P)H-Dependent Enzymes for Reductive Amination: Active Site Description and Carbonyl-Containing Compound Spectrum | Ducrot L, Bennett M, Grogan G and Vergne-Vaxelaire C | | | | Community-led, integrated, reproducible multi-omics with anvi'o | Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen OC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjodin A, Scott JJ, Vazquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO and Willis AD | | | | Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp | Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai RB, Da Silva C, Istace B, Labadie K, Marie D, Mercier J, Rukwavu T, Szymczak J, Tonon T, Alves-de-Souza C, Rouze P, van de Peer Y, Wincker P, Rombauts S, Porcel BM and Guillou L | | | | Giant viruses and the origin of eukaryotic RNA polymerases | | | | | Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes | Garczarek L, Guyet U, Dore H, Farrant GK, Hoebeke M, Brillet-Gueguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguille G, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury JM, Wincker P, Scanlan DJ and Partensky F | | | | Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization | Gauthier J, Boulain H, van Vugt J, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagne N, Boulogne I, Sabeti-Azad M, Maibeche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Consoli FL, Dupas S, Hua-Van A, Le Goff G, Bezier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA and Drezen JM | | | | Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant | Gay EJ, Soyer JL, Lapalu N, Linglin J, Fudal I, Da Silva C, Wincker P, Aury JM, Cruaud C, Levrel A, Lemoine J, Delourme R, Rouxel T and Balesdent MH | | | | Biocatalysed synthesis of chiral amines: continuous colorimetric assays for mining amine-transaminases | Gourbeyre L, Heuson E, Charmantray F, Helaine V, Debard A, Petit JL, de Berardinis V and Gefflaut T | | | | VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses | Guo JR, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitua MC, Vik D, Sullivan MB and Roux S | | | | Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean | Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont TO, Gaia M, Henry N, Hernandez-Velazquez R, Nguyen CH, Mamitsuka H, Forterre P, Jaillon O, de Vargas C, Sullivan MB, Suttle CA, Guidi L and Ogata H | | | | Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton | Kijima S, Delmont TO, Miyazaki U, Gaia M, Endo H and Ogata H | | | | Comparative genomics reveals new functional insights in uncultured MAST species | Labarre A, Lopez-Escard D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R and Massana R | | | | Segregation Distortion for Male Parents in High Density Genetic Maps from Reciprocal Crosses between Two Self-Incompatible Cultivars Confirms a Gametophytic System for Self-Incompatibility in Citrus | Ollitrault P, Ahmed D, Costantino G, Evrard JC, Cardi C, Mournet P, Perdereau A and Froelicher Y | | | | AI-based mobile application to fight antibiotic resistance | Pascucci M, Royer G, Adamek J, Al Asmar M, Aristizabal D, Blanche L, Bezzarga A, Boniface-Chang G, Brunner A, Curel C, Dulac-Arnold G, Fakhri RM, Malou N, Nordon C, Runge V, Samson F, Sebastian E, Soukieh D, Vert JP, Ambroise C and Madoui MA | | | | Noncanonical DNA polymerization by aminoadenine-based siphoviruses | Pezo V, Jaziri F, Bourguignon PY, Louis D, Jacobs-Sera D, Rozenski J, Pochet S, Herdewijn P, Hatfull GF, Kaminski PA and Marliere P | | | | Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in Espeletia | Pouchon C, Lavergne S, Fernandez A, Alberti A, Aubert S and Mavarez J | | | | Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts | Rasmussen JA, Villumsen KR, Duchene DA, Puetz LC, Delmont TO, Sveier H, Jorgensen LV, Praebel K, Martin MD, Bojesen AM, Gilbert MTP, Kristiansen K and Limborg MT | | | | Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii | Reynes L, Thibaut T, Mauger S, Blanfune A, Holon F, Cruaud C, Couloux A, Valero M and Aurelle D | | | | Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period | Royer G, Darty MM, Clermont O, Condamine B, Laouenan C, Decousser JW, Vallenet D, Lefort A, de Lastours V, Denamur E, Grp C and Grp S | | | | Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications | Royer G, Roisin L, Demontant V, Lo S, Coutte L, Lim P, Pawlotsky JM, Jacquier H, Lepeule R, Rodriguez C and Woerther PL | | | | Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients | Schauberger C, Glud RN, Hausmann B, Trouche B, Maignien L, Poulain J, Wincker P, Arnaud-Haond S, Wenzhofer F and Thamdrup B | | | | A community resource for paired genomic and metabolomic data mining | Schorn MA, Verhoeven S, Ridder L, Huber F, Acharya DD, Aksenov AA, Aleti G, Moghaddam JA, Aron AT, Aziz S, Bauermeister A, Bauman KD, Baunach M, Beemelmanns C, Beman JM, Berlanga-Clavero MV, Blacutt AA, Bode HB, Boullie A, Brejnrod A, Bugni TS, Calteau A, Cao L, Carrion VJ, Castelo-Branco R, Chanana S, Chase AB, Chevrette MG, Costa-Lotufo LV, Crawford JM, Currie CR, Cuypers B, Dang T, de Rond T, Demko AM, Dittmann E, Du C, Drozd C, Dujardin JC, Dutton RJ, Edlund A, Fewer DP, Garg N, Gauglitz JM, Gentry EC, Gerwick L, Glukhov E, Gross H, Gugger M, Matus DGG, Helfrich EJN, Hempel BF, Hur JS, Iorio M, Jensen PR, Kang KB, Kaysser L, Kelleher NL, Kim CS, Kim KH, Koester I, Konig GM, Leao T, Lee SR, Lee YY, Li XJ, Little JC, Maloney KN, Mannle D, Martin HC, McAvoy AC, Metcalf WW, Mohimani H, Molina-Santiago C, Moore BS, Mullowney MW, Muskat M, Nothias LF, O'Neill EC, Parkinson EI, Petras D, Piel J, Pierce EC, Pires K, Reher R, Romero D, Roper MC, Rust M, Saad H, Saenz C, Sanchez LM, Sorensen SJ, Sosio M, Sussmuth RD, Sweeney D, Tahlan K, Thomson RJ, Tobias NJ, Trindade-Silva AE, van Wezel GP, Wang MX, Weldon KC, Zhang F, Ziemert N, Duncan KR, Crusemann M, Rogers S, Dorrestein PC, Medema MH and van der Hooft JJJ | | | | A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes | Sleiman D, Garcia PS, Lagune M, Loc'h J, Haouz A, Taib N, Rothlisberger P, Gribaldo S, Marliere P and Kaminski PA | | | | Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology | Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TLP, Erkens RHJ, Sauquet H, Pirie MD, Thomas DC and Cao KF | | | | Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution | Sun ZY, Vaisvila R, Hussong LM, Yan B, Baum C, Saleh L, Samaranayake M, Guan SX, Dai N, Correa IR, Pradhan S, Davis TB, Evans TC and Ettwiller LM | | | | Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean | Wang S-Z, Cruaud C, Aury J-M, Vallenet D, Poulain J, Vacherie B, Zaparucha A and Vergne-Vaxelaire C | | | | The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material | Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E | | | | Plastome comparative genomics in maples resolves the infrageneric backbone relationships | Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS | | | | Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations | Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N | | | | panRGP: a pangenome-based method to predict genomic islands and explore their diversity | Bazin A, Gautreau G, Medigue C, Vallenet D and Calteau A | | | | Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses | Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G | | | | A comprehensive resource for retrieving, visualizing, and integrating functional genomics data | Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H and Mendoza-Parra MA | | | | Large scale active-learning-guided exploration for in vitro protein production optimization | Borkowski O, Koch M, Zettor A, Pandi A, Batista AC, Soudier P and Faulon JL | | | | TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages | Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R | | | | Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa | Boutte J, Maillet L, Chaussepied T, Letort S, Aury JM, Belser C, Boideau F, Brunet A, Coriton O, Deniot G, Falentin C, Huteau V, Lode-Taburel M, Morice J, Trotoux G, Chevre AM, Rousseau-Gueutin M and de Carvalho JF | | | | An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities | Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S | | | | Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean | Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D | | | | Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach | Cai RB, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M and Guillou L | | | | Metagenomic Mining for Amine Dehydrogenase Discovery | Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C | | | | A framework for in situ molecular characterization of coral holobionts using nanopore sequencing | Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S and Wincker P | | | | Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses | Christo-Foroux E, Alempic JM, Lartigue A, Santini S, Labadie K, Legendre M, Abergel C and Claverie JM | | | | Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it | de Lastours V, Laouenan C, Royer G, Carbonnelle E, Lepeule R, Esposito-Farese M, Clermont O, Duval X, Fantin B, Mentre F, Decousser JW, Denamur E, Lefort A and Grp S | | | | Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity | Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D | | | | BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons | Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelievre M, Mondy S, Prevost-Boure NC, Maron PA, Ranjard L and Terrat S | | | | Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria | Dore H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Gueguen L, Hoebeke M, Bisch A, Le Corguille G, Corre E, Labadie K, Aury JM, Wincker P, Choi DH, Noh JH, Eveillard D, Scanlan DJ, Partensky F and Garczarek L | | | | Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions | Endo H, Blanc-Mathieu R, Li YZ, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp-Boss L, Sunagawa S and Ogata H | | | | Enzymatic Formation of an Artificial Base Pair Using a Modified Purine Nucleoside Triphosphate | Flamme M, Rothlisberger P, Levi-Acobas F, Chawla M, Oliva R, Cavallo L, Gasser G, Marliere P, Herdewijn P and Hollenstein M | | | | Tara Pacific Expedition's Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results | Flores JM, Bourdin G, Altaratz O, Trainic M, Lang-Yona N, Dzimban E, Steinau S, Tettich F, Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Douville E, Forcioli D, Furla P, Galand PE, Sullivan MB, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Bowler C, Gorsky G, Rudich Y, Vardi A and Koren I | | | | Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes | Foucher A, Evrard O, Ficetola GF, Gielly L, Poulain J, Giguet-Covex C, Laceby JP, Salvador-Blanes S, Cerdan O and Poulenard J | | | | Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2 | Freel KC, Fouteau S, Roche D, Farasin J, Huber A, Koechler S, Peres M, Chiboub O, Varet H, Proux C, Deschamps J, Briandet R, Torchet R, Cruveiller S, Lievremont D, Coppee JY, Barbe V and Arsene-Ploetze F | | | | PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph | Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Medigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC and Vallenet D | | | | REPLY TO KU AND SUN: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes | Guglielmini J, Woo AC, Krupovic M, Forterre P and Gaia M | | | | FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing | Hennion M, Arbona JM, Lacroix L, Cruaud C, Theulot B, Le Tallec B, Proux F, Wu X, Novikova E, Engelen S, Lemainque A, Audit B and Hyrien O | | | | BiSCoT: improving large eukaryotic genome assemblies with optical maps | Istace B, Belser C and Aury JM | | | | Channeling C1 Metabolism toward S-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria | Jacoby C, Krull J, Andexer J, Jehmlich N, von Bergen M, Bruls T and Boll M | | | | Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6 | Jouault A, Gobet A, Simon M, Portier E, Perennou M, Corre E, Gaillard F, Vallenet D, Michel G, Fleury Y, Bazire A and Dufour A | | | | Biogeography of soil microbial habitats across France | Karimi B, Villerd J, Dequiedt S, Terrat S, Boure NCP, Djemiel C, Lelievre M, Tripied J, Nowak V, Saby NPA, Bispo A, Jolivet C, Arrouays D, Wincker P, Cruaud C and Ranjard L | | | | Dinoflagellate Host Chloroplasts and Mitochondria Remain Functional During Amoebophrya Infection | Kayal E, Alves-de-Souza C, Farhat S, Velo-Suarez L, Monjol J, Szymczak J, Bigeard E, Marie D, Noel B, Porcel BM, Corre E, Six C and Guillou L | | | | Reinforcement Learning for Bioretrosynthesis | Koch M, Duigou T and Faulon JL | | | | Binning unassembled short reads based on k-mer abundance covariance using sparse coding | Kyrgyzov O, Prost V, Gazut S, Farcy B and Bruls T | | | | metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics | Laso-Jadart R, Ambroise C, Peterlongo P and Madoui MA | | | | Investigating population-scale allelic differential expression in wild populations ofOithona similis(Cyclopoida, Claus, 1866) | Laso-Jadart R, Sugier K, Petit E, Labadie K, Peterlongo P, Ambroise C, Wincker P, Jamet JL and Madoui MA | | | | Pyruvate Aldolases Catalyze Cross-Aldol Reactions between Ketones: Highly Selective Access to Multi-Functionalized Tertiary Alcohols | Laurent V, Gourbeyre L, Uzel A, Helaine V, Nauton L, Traikia M, de Berardinis V, Salanoubat M, Gefflaut T, Lemaire M and Guerard-Helaine C | | | | Genome Resolved Biogeography of Mamiellales | Leconte J, Benites LF, Vannier T, Wincker P, Piganeau G and Jaillon O | | | | Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps | Legeai F, Santos BF, Robin S, Bretaudeau A, Dikow RB, Lemaitre C, Jouan V, Ravallec M, Drezen JM, Tagu D, Baudat F, Gyapay G, Zhou X, Liu SL, Webb BA, Brady S and Volkoff AN | | | | ATP Regeneration System in Chemoenzymatic Amide Bond Formation with Thermophilic CoA Ligase | Lelievre CM, Balandras M, Petit JL, Vergne-Vaxelaire C and Zaparucha A | | | | Adaptive introgression as a driver of local adaptation to climate in European white oaks | Leroy T, Louvet JM, Lalanne C, Le Provost G, Labadie K, Aury JM, Delzon S, Plomion C and Kremer A | | | | Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers | Leroy T, Rougemont Q, Dupouey JL, Bodenes C, Lalanne C, Belser C, Labadie K, Le Provost G, Aury JM, Kremer A and Plomion C | | | | Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data | Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury JM, Touzet H and Chikhi R | | | | Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems | Manzano-Marin A, d'acier AC, Clamens AL, Orvain C, Cruaud C, Barbe V and Jousselin E | | | | Chromosome reciprocal translocations have accompanied subspecies evolution in bananas | Martin G, Baurens FC, Hervouet C, Salmon F, Delos JM, Labadie K, Perdereau A, Mournet P, Blois L, Dupouy M, Carreel F, Ricci S, Lemainque A, Yahiaoui N and D'Hont A | | | | Comparative Whole-Genome Phylogeny of Animal, Environmental, and Human Strains Confirms the Genogroup Organization and Diversity of the Stenotrophomonas maltophilia Complex | Mercier-Darty M, Royer G, Lamy B, Charron C, Lemenand O, Gomart C, Fourreau F, Madec JY, Jumas-Bilak E, Decousser JW, Resapath N and Col BVHN | | | | Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria | Monteil CL, Grouzdev DS, Perriere G, Alonso B, Rouy Z, Cruveiller S, Ginet N, Pignol D and Lefevre CT | | | | Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant | Morin L, Goubet A, Madigou C, Pernelle JJ, Palmier K, Labadie K, Lemainque A, Michot O, Astoul L, Barbier P, Almayrac JL and Sghir A | | | | Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen | Muir A, Gurung I, Cehovin A, Bazin A, Vallenet D and Pelicic V | | | | Use of beta(3)-methionine as an amino acid substrate of Escherichia coli methionyl-tRNA synthetase | Nigro G, Bourcier S, Lazennec-Schurdevin C, Schmitt E, Marliere P and Mechulam Y | | | | Vitamin-guanosine monophosphate conjugates for in vitro transcription priming | Papastavrou N, Bande O, Marliere P, Groaz E and Herdewijn P | | | | Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants | Petitot AS, Dereeper A, Da Silva C, Guy J and Fernandez D | | | | In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis | Plewniak F, Koechler S, Le Paslier D, Hery M, Bruneel O and Bertin PN | | | | Ancestral state reconstruction of metabolic pathways across pangenome ensembles | Psomopoulos FE, van Helden J, Medigue C, Chasapi A and Ouzounis CA | | | | Modulated Response ofAspergillus fumigatusandStenotrophomonas maltophiliato Antimicrobial Agents in Polymicrobial Biofilm | Roisin L, Melloul E, Woerther PL, Royer G, Decousser JW, Guillot J, Dannaoui E and Botterel F | | | | The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals | Rouil J, Jousselin E, d'acier AC, Cruaud C and Manzano-Marin A | | | | Long-read assembly of the Brassica napus reference genome Darmor-bzh | Rousseau-Gueutin M, Belser C, Da Silva C, Richard G, Istace B, Cruaud C, Falentin C, Boideau F, Boutte J, Delourme R, Deniot G, Engelen S, de Carvalho JF, Lemainque A, Maillet L, Morice J, Wincker P, Denoeud F, Chevre AM and Aury JM | | |
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