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Genoscope Publications

Published on 25 June 2018
  
Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergenceNew
Areces-Berazain F, Hinsinger DD and Strijk JS
Hapo-G, haplotype-aware polishing of genome assemblies with accurate readsNew
Aury JM and Istace B
Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA DeliveryNew
Baladi T, Nilsson JR, Gallud A, Celauro E, Gasse C, Levi-Acobas F, Sarac I, Hollenstein MR, Dahlen A, Esbjorner EK and Wilhelmsson LM
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencingNew
Belser C, Baurens FC, Noel B, Martin G, Cruaud C, Istace B, Yahiaoui N, Labadie K, Hribova E, Dolezel J, Lemainque A, Wincker P, D'Hont A and Aury JM
Purification and Characterization of Nit, a Robust Thermostable Nitrilase From Parabukholderia phymatumNew
Bessonnet T, Mariage A, Petit JL, Pellouin V, Debard A, Zaparucha A, Vergne-Vaxelaire C and de Berardinis V
Change in Cofactor Specificity of Oxidoreductases by Adaptive Evolution of an Escherichia coli NADPH-Auxotrophic StrainNew
Bouzon M, Doring V, Dubois I, Berger A, Stoffel GMM, Ramirez LC, Meyer SN, Foure M, Roche D, Perret A, Erb TJ, Bar-Even A and Lindner SN
Macroscale patterns of oceanic zooplankton composition and size structureNew
Brandao MC, Benedetti F, Martini S, Soviadan YD, Irisson JO, Romagnan JB, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp-Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F and Tara Oceans Consortium C
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNANew
Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S and Zeppilli D
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcodingNew
Brandt MI, Trouche B, Quintric L, Gunther B, Wincker P, Poulain J and Arnaud-Haond S
BoardION: real-time monitoring of Oxford Nanopore sequencing instrumentsNew
Bruno A, Aury JM and Engelen S
Mitotic recombination between homologous chromosomes drives genomic diversity in diatomsNew
Bulankova P, Sekulic M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna-Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, Bowler C, Vyverman W, Vandepoele K and De Veylder L
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN ArchaeaNew
Castelle CJ, Meheust R, Jaffe AL, Seitz K, Gong XZ, Baker BJ and Banfield JF
Environmental vulnerability of the global ocean epipelagic plankton community interactomeNew
Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, Babin M, Iudicone D, Jaillon O, Karsenti E, Wincker P, Karp-Boss L, Sullivan MB, Bowler C, de Vargas C, Eveillard D and Tara Oceans C
Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and ActivityNew
Cheng JG, Jacquin J, Conan P, Pujo-Pay M, Barbe V, George M, Fabre P, Bruzaud S, Ter Halle A, Meistertzheim AL and Ghiglione JF
Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybridsNew
Clavel P, Dumoncel J, Sarkissian CD, Seguin-Orlando A, Calviere-Tonasso L, Schiavinato S, Chauvey L, Perdereau A, Aury JM, Wincker P, Onar V, Clavel B, Lepetz S, Braga J and Orlando L
The NANOTUMOR consortium - Towards the Tumor Cell AtlasNew
Colin F, Schauer K, Hamiche A, Martineau P, Borg JP, Bednar J, Bertolin G, Camoin L, Collette Y, Dimitrov S, Fournier I, Hyenne V, Mendoza-Parra MA, Morelli X, Ronde P, Sumara I, Tramier M, Schultz P and Goetz JG
Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switchNew
Collins SP, Rostain W, Liao CY and Beisel CL
First Direct Evidence of Interpartner Hydride/Deuteride Exchanges for Stored Sodiated Arginine/Fructose-6-phosphate Complex Anions within Salt-Solvated StructuresNew
Darii E, Gimbert Y, Alves S, Damont A, Perret A, Woods AS, Fenaille F and Tabet J-C
Sequence diversity and evolution of a group of iflaviruses associated with ticksNew
Daveu R, Hervet C, Sigrist L, Sassera D, Jex A, Labadie K, Aury JM, Plantard O and Rispe C
Microbiological versus Chemical Reductive Sulfidation: An Experimental and Theoretical StudyNew
Della-Negra O, de Bonneville BL, Chaussonnerie S, Le Paslier D, Frison G and Saaidi PL
A community perspective on the concept of marine holobionts: current status, challenges, and future directionsNew
Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cardenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachoni CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, Lathier FH, Medina M, Marzinelli EM, Morganti TM, Pons LN, Prado S, Pintado J, Saha M, selosse MA, Skillings D, Stock W, Sunagawa S, Toulza E, Vorobev A, Leblanc C and Not F
Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysisNew
Dong N, Bandura J, Zhang ZL, Wang Y, Labadie K, Noel B, Davison A, Koene JM, Sun HS, Coutellec MA and Feng ZP
Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytesNew
Dorrell RG, Villain A, Perez-Lamarque B, de Kerdrel GA, McCallum G, Watson AK, Ait-Mohamed O, Alberti A, Corre E, Frischkorn KR, Karlusich JJP, Pelletier E, Morlon H, Bowler C and Blanc G
NAD(P)H-Dependent Enzymes for Reductive Amination: Active Site Description and Carbonyl-Containing Compound SpectrumNew
Ducrot L, Bennett M, Grogan G and Vergne-Vaxelaire C
Community-led, integrated, reproducible multi-omics with anvi'oNew
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen OC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjodin A, Scott JJ, Vazquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO and Willis AD
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya sppNew
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai RB, Da Silva C, Istace B, Labadie K, Marie D, Mercier J, Rukwavu T, Szymczak J, Tonon T, Alves-de-Souza C, Rouze P, van de Peer Y, Wincker P, Rombauts S, Porcel BM and Guillou L
Giant viruses and the origin of eukaryotic RNA polymerasesNew
Forterre P and Gaia M
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomesNew
Garczarek L, Guyet U, Dore H, Farrant GK, Hoebeke M, Brillet-Gueguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguille G, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury JM, Wincker P, Scanlan DJ and Partensky F
One Step Forward in Exploration of Class II Pyruvate Aldolases Nucleophile and Electrophile Substrate SpecificityNew
Gastaldi C, Tagne RN, Laurent V, Helaine V, Petit JL, Traikia M, de Berardinis V, Lemaire M and Guerard-Helaine C
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonizationNew
Gauthier J, Boulain H, van Vugt J, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagne N, Boulogne I, Sabeti-Azad M, Maibeche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Consoli FL, Dupas S, Hua-Van A, Le Goff G, Bezier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA and Drezen JM
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plantNew
Gay EJ, Soyer JL, Lapalu N, Linglin J, Fudal I, Da Silva C, Wincker P, Aury JM, Cruaud C, Levrel A, Lemoine J, Delourme R, Rouxel T and Balesdent MH
Biocatalysed synthesis of chiral amines: continuous colorimetric assays for mining amine-transaminasesNew
Gourbeyre L, Heuson E, Charmantray F, Helaine V, Debard A, Petit JL, de Berardinis V and Gefflaut T
Population genomics of apricots unravels domestication history and adaptive eventsNew
Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, Istace B, Denis E, Carrere S, Audergon JM, Roch G, Lambert P, Zhebentyayeva T, Liu WS, Bouchez O, Lopez-Roques C, Serre RF, Debuchy R, Tran J, Wincker P, Chen XL, Petriacq P, Barre A, Nikolski M, Aury JM, Abbott AG, Giraud T and Decroocq V
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA virusesNew
Guo JR, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitua MC, Vik D, Sullivan MB and Roux S
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use CaseNew
Istace B, Belser C, Falentin C, Labadie K, Boideau F, Deniot G, Maillet L, Cruaud C, Bertrand L, Chevre AM, Wincker P, Rousseau-Gueutin M and Aury JM
Microbial Diversity and Activity During the Biodegradation in Seawater of Various Substitutes to Conventional Plastic Cotton Swab SticksNew
Jacquin J, Callac N, Cheng JG, Giraud C, Gorand Y, Denoual C, Pujo-Pay M, Conan P, Meistertzheim AL, Barbe V, Bruzaud S and Ghiglione JF
Eukaryotic virus composition can predict the efficiency of carbon export in the global oceanNew
Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont TO, Gaia M, Henry N, Hernandez-Velazquez R, Nguyen CH, Mamitsuka H, Forterre P, Jaillon O, de Vargas C, Sullivan MB, Suttle CA, Guidi L and Ogata H
Global distribution patterns of marine nitrogen-fixers by imaging and molecular methodsNew
Karlusich JJP, Pelletier E, Lombard F, Carsique M, Dvorak E, Colin S, Picheral M, Cornejo-Castillo FM, Acinas SG, Pepperkok R, Karsenti E, de Vargas C, Wincker P, Bowler C and Foster RA
Discovery of Viral Myosin Genes With Complex Evolutionary History Within PlanktonNew
Kijima S, Delmont TO, Miyazaki U, Gaia M, Endo H and Ogata H
Comparative genomics reveals new functional insights in uncultured MAST speciesNew
Labarre A, Lopez-Escard D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R and Massana R
Niche adaptation promoted the evolutionary diversification of tiny ocean predatorsNew
Latorre F, Deutschmann IM, Labarre A, Obiol A, Krabberod AK, Pelletier E, Sieracki ME, Cruaud C, Jaillon O, Massana R and Logares R
Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infectionNew
Le Luyer J, Schull Q, Auffret P, Lopez P, Crusot M, Belliard C, Basset C, Carradec Q, Poulain J, Planes S and Saulnier D
Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial lifeNew
Meheust R, Huang S, Rivera-Lugo R, Banfield JF and Light SH
Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10(-/-) MiceNew
Miyoshi J, Miyoshi S, Delmont TO, Cham C, Lee STM, Sakatani A, Yang KR, Shan Y, Kennedy M, Kiefl E, Yousef M, Crosson S, Sogin M, Antonopoulos DA, Eren AM, Leone V and Chang EB
Inferring biologically relevant molecular tissue substructures by agglomerative clustering of digitized spatial transcriptomes with multilayerNew
Moehlin J, Mollet B, Colombo BM and Mendoza-Parra MA
Segregation Distortion for Male Parents in High Density Genetic Maps from Reciprocal Crosses between Two Self-Incompatible Cultivars Confirms a Gametophytic System for Self-Incompatibility in CitrusNew
Ollitrault P, Ahmed D, Costantino G, Evrard JC, Cardi C, Mournet P, Perdereau A and Froelicher Y
Estimating the Travel Time and the Most Likely Path from Lagrangian DriftersNew
O'Malley M, Sykulski AM, Laso-Jadart R and Madoui MA
AI-based mobile application to fight antibiotic resistanceNew
Pascucci M, Royer G, Adamek J, Al Asmar M, Aristizabal D, Blanche L, Bezzarga A, Boniface-Chang G, Brunner A, Curel C, Dulac-Arnold G, Fakhri RM, Malou N, Nordon C, Runge V, Samson F, Sebastian E, Soukieh D, Vert JP, Ambroise C and Madoui MA
Noncanonical DNA polymerization by aminoadenine-based siphovirusesNew
Pezo V, Jaziri F, Bourguignon PY, Louis D, Jacobs-Sera D, Rozenski J, Pochet S, Herdewijn P, Hatfull GF, Kaminski PA and Marliere P
Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in EspeletiaNew
Pouchon C, Lavergne S, Fernandez A, Alberti A, Aubert S and Mavarez J
A zero inflated log-normal model for inference of sparse microbial association networksNew
Prost V, Gazut S and Bruls T
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hostsNew
Rasmussen JA, Villumsen KR, Duchene DA, Puetz LC, Delmont TO, Sveier H, Jorgensen LV, Praebel K, Martin MD, Bojesen AM, Gilbert MTP, Kristiansen K and Limborg MT
Genomic signatures of clonality in the deep water kelp Laminaria rodrigueziiNew
Reynes L, Thibaut T, Mauger S, Blanfune A, Holon F, Cruaud C, Couloux A, Valero M and Aurelle D
Evolutionary origins and species delineation of the two Pyrenean endemics Campanula jaubertiana and C. andorrana (Campanulaceae): evidence for transverse alpine speciationNew
Roquet C, Smycka J, Alberti A, Boleda M, Coissac E, Denoeud F, Komac B, Lavergne S, Pladevall C and Saez L
O-antigen targeted vaccines against E. coli may be useful in reducing morbidity, mortality and antimicrobial resistanceNew
Royer G, Clermont O, Condamine B, Mercier-Darty M, Laouenan C, Lefort A, Denamur E, de Lastours V, Colibafi and groups S
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year periodNew
Royer G, Darty MM, Clermont O, Condamine B, Laouenan C, Decousser JW, Vallenet D, Lefort A, de Lastours V, Denamur E, Grp C and Grp S
Lack of association between colistin resistance and chlorhexidine reduced susceptibility in clinical isolates of Escherichia coliNew
Royer G, Poirel L, La Combe B, Clermont O, Chau F, Mercier-Darty M, Denamur E, Nordmann P, Ricard J-D and Decousser J-W
Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modificationsNew
Royer G, Roisin L, Demontant V, Lo S, Coutte L, Lim P, Pawlotsky JM, Jacquier H, Lepeule R, Rodriguez C and Woerther PL
Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradientsNew
Schauberger C, Glud RN, Hausmann B, Trouche B, Maignien L, Poulain J, Wincker P, Arnaud-Haond S, Wenzhofer F and Thamdrup B
A community resource for paired genomic and metabolomic data miningNew
Schorn MA, Verhoeven S, Ridder L, Huber F, Acharya DD, Aksenov AA, Aleti G, Moghaddam JA, Aron AT, Aziz S, Bauermeister A, Bauman KD, Baunach M, Beemelmanns C, Beman JM, Berlanga-Clavero MV, Blacutt AA, Bode HB, Boullie A, Brejnrod A, Bugni TS, Calteau A, Cao L, Carrion VJ, Castelo-Branco R, Chanana S, Chase AB, Chevrette MG, Costa-Lotufo LV, Crawford JM, Currie CR, Cuypers B, Dang T, de Rond T, Demko AM, Dittmann E, Du C, Drozd C, Dujardin JC, Dutton RJ, Edlund A, Fewer DP, Garg N, Gauglitz JM, Gentry EC, Gerwick L, Glukhov E, Gross H, Gugger M, Matus DGG, Helfrich EJN, Hempel BF, Hur JS, Iorio M, Jensen PR, Kang KB, Kaysser L, Kelleher NL, Kim CS, Kim KH, Koester I, Konig GM, Leao T, Lee SR, Lee YY, Li XJ, Little JC, Maloney KN, Mannle D, Martin HC, McAvoy AC, Metcalf WW, Mohimani H, Molina-Santiago C, Moore BS, Mullowney MW, Muskat M, Nothias LF, O'Neill EC, Parkinson EI, Petras D, Piel J, Pierce EC, Pires K, Reher R, Romero D, Roper MC, Rust M, Saad H, Saenz C, Sanchez LM, Sorensen SJ, Sosio M, Sussmuth RD, Sweeney D, Tahlan K, Thomson RJ, Tobias NJ, Trindade-Silva AE, van Wezel GP, Wang MX, Weldon KC, Zhang F, Ziemert N, Duncan KR, Crusemann M, Rogers S, Dorrestein PC, Medema MH and van der Hooft JJJ
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomesNew
Sellis D, Guerin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, Duret L and Duharcourt S
A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomesNew
Sleiman D, Garcia PS, Lagune M, Loc'h J, Haouz A, Taib N, Rothlisberger P, Gribaldo S, Marliere P and Kaminski PA
Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomologyNew
Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TLP, Erkens RHJ, Sauquet H, Pirie MD, Thomas DC and Cao KF
Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencingNew
Studer F, Petit JL, Engelen S and Mendoza-Parra MA
Male Differentiation in the Marine Copepod Oithona nana Reveals the Development of a New Nervous Ganglion and Lin12-Notch-Repeat Protein-Associated ProteolysisNew
Sugier K, Laso-Jadart R, Vacherie B, Kafer J, Bertrand L, Labadie K, Martins N, Orvain C, Petit E, Wincker P, Jamet JL, Alberti A and Madoui MA
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolutionNew
Sun ZY, Vaisvila R, Hussong LM, Yan B, Baum C, Saleh L, Samaranayake M, Guan SX, Dai N, Correa IR, Pradhan S, Davis TB, Evans TC and Ettwiller LM
Nitrilase immobilization and transposition from a micro-scale batch to a continuous process increase the nicotinic acid productivityNew
Teepakorn C, Zajkoska P, Cwicklinski G, De Berardinis V, Zaparucha A, Nonglaton G and Anxionnaz-Minvielle Z
Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific OceanNew
Wang SZ, Cruaud C, Aury JM, Vallenet D, Poulain J, Vacherie B, Zaparucha A and Vergne-Vaxelaire C
Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral TaxonomyNew
Woo ACC, Gaia M, Guglielmini J, Da Cunha V and Forterre P
Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana TrenchNew
Zhang WJ, Zhang C, Zhou SY, Li XG, Mangenot S, Fouteau S, Guerin T, Qi XQ, Yang J, Bartlett DH and Wu LF
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried MaterialNew
Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E
Plastome comparative genomics in maples resolves the infrageneric backbone relationshipsNew
Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane BiotransformationsNew
Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N
panRGP: a pangenome-based method to predict genomic islands and explore their diversityNew
Bazin A, Gautreau G, Medigue C, Vallenet D and Calteau A
Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae GrassesNew
Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G
A comprehensive resource for retrieving, visualizing, and integrating functional genomics dataNew
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H and Mendoza-Parra MA
Large scale active-learning-guided exploration for in vitro protein production optimizationNew
Borkowski O, Koch M, Zettor A, Pandi A, Batista AC, Soudier P and Faulon JL
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineagesNew
Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapaNew
Boutte J, Maillet L, Chaussepied T, Letort S, Aury JM, Belser C, Boideau F, Brunet A, Coriton O, Deniot G, Falentin C, Huteau V, Lode-Taburel M, Morice J, Trotoux G, Chevre AM, Rousseau-Gueutin M and de Carvalho JF
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea CommunitiesNew
Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S
Large scale patterns of marine diatom richness: Drivers and trends in a changing oceanNew
Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approachNew
Cai RB, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M and Guillou L
Metagenomic Mining for Amine Dehydrogenase DiscoveryNew
Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C
A framework for in situ molecular characterization of coral holobionts using nanopore sequencingNew
Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S and Wincker P
Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant VirusesNew
Christo-Foroux E, Alempic JM, Lartigue A, Santini S, Labadie K, Legendre M, Abergel C and Claverie JM
Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make itNew
de Lastours V, Laouenan C, Royer G, Carbonnelle E, Lepeule R, Esposito-Farese M, Clermont O, Duval X, Fantin B, Mentre F, Decousser JW, Denamur E, Lefort A and Grp S
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activityNew
Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL and Le Paslier D
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene ampliconsNew
Djemiel C, Dequiedt S, Karimi B, Cottin A, Girier T, El Djoudi Y, Wincker P, Lelievre M, Mondy S, Prevost-Boure NC, Maron PA, Ranjard L and Terrat S
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine PicocyanobacteriaNew
Dore H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Gueguen L, Hoebeke M, Bisch A, Le Corguille G, Corre E, Labadie K, Aury JM, Wincker P, Choi DH, Noh JH, Eveillard D, Scanlan DJ, Partensky F and Garczarek L
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functionsNew
Endo H, Blanc-Mathieu R, Li YZ, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp-Boss L, Sunagawa S and Ogata H
Enzymatic Formation of an Artificial Base Pair Using a Modified Purine Nucleoside TriphosphateNew
Flamme M, Rothlisberger P, Levi-Acobas F, Chawla M, Oliva R, Cavallo L, Gasser G, Marliere P, Herdewijn P and Hollenstein M
Tara Pacific Expedition's Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary ResultsNew
Flores JM, Bourdin G, Altaratz O, Trainic M, Lang-Yona N, Dzimban E, Steinau S, Tettich F, Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Douville E, Forcioli D, Furla P, Galand PE, Sullivan MB, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas OP, Trouble R, de Vargas C, Thurber RV, Voolstra CR, Wincker P, Zoccola D, Bowler C, Gorsky G, Rudich Y, Vardi A and Koren I
Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changesNew
Foucher A, Evrard O, Ficetola GF, Gielly L, Poulain J, Giguet-Covex C, Laceby JP, Salvador-Blanes S, Cerdan O and Poulenard J
Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2New
Freel KC, Fouteau S, Roche D, Farasin J, Huber A, Koechler S, Peres M, Chiboub O, Varet H, Proux C, Deschamps J, Briandet R, Torchet R, Cruveiller S, Lievremont D, Coppee JY, Barbe V and Arsene-Ploetze F
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graphNew
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Medigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC and Vallenet D
REPLY TO KU AND SUN: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotesNew
Guglielmini J, Woo AC, Krupovic M, Forterre P and Gaia M
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencingNew
Hennion M, Arbona JM, Lacroix L, Cruaud C, Theulot B, Le Tallec B, Proux F, Wu X, Novikova E, Engelen S, Lemainque A, Audit B and Hyrien O
BiSCoT: improving large eukaryotic genome assemblies with optical mapsNew
Istace B, Belser C and Aury JM
Channeling C1 Metabolism toward S-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading BacteriaNew
Jacoby C, Krull J, Andexer J, Jehmlich N, von Bergen M, Bruls T and Boll M
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