You are here : Home > Research Centers and Units > Genoscope > Genoscope Publications

Genoscope Publications

Published on 25 June 2018
Genome-wide supermatrix analyses of maples (Acer, Sapindaceae) reveal recurring inter-continental migration, mass extinction, and rapid lineage divergence
Areces-Berazain F, Hinsinger DD and Strijk JS
A Core Transcription Regulatory Circuitry Defining Microglia Cell Identity Inferred from the Reanalysis of Multiple Human Microglia Differentiation Protocols
Aubert A, Studer F, Colombo BM and Mendoza-Parra MA
Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads
Aury JM and Istace B
Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA Delivery
Baladi T, Nilsson JR, Gallud A, Celauro E, Gasse C, Levi-Acobas F, Sarac I, Hollenstein MR, Dahlen A, Esbjorner EK and Wilhelmsson LM
Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes
Baum C, Lin Y-C, Fomenkov A, Anton BP, Chen L, Yan B, Evans TC, Roberts RJ, Tolonen AC and Ettwiller L
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Belser C, Baurens FC, Noel B, Martin G, Cruaud C, Istace B, Yahiaoui N, Labadie K, Hribova E, Dolezel J, Lemainque A, Wincker P, D'Hont A and Aury JM
Purification and Characterization of Nit, a Robust Thermostable Nitrilase From Parabukholderia phymatum
Bessonnet T, Mariage A, Petit JL, Pellouin V, Debard A, Zaparucha A, Vergne-Vaxelaire C and de Berardinis V
Change in Cofactor Specificity of Oxidoreductases by Adaptive Evolution of an Escherichia coli NADPH-Auxotrophic Strain
Bouzon M, Doring V, Dubois I, Berger A, Stoffel GMM, Ramirez LC, Meyer SN, Foure M, Roche D, Perret A, Erb TJ, Bar-Even A and Lindner SN
Macroscale patterns of oceanic zooplankton composition and size structure
Brandao MC, Benedetti F, Martini S, Soviadan YD, Irisson JO, Romagnan JB, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp-Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F and Tara Oceans Consortium C
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S and Zeppilli D
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Brandt MI, Trouche B, Quintric L, Gunther B, Wincker P, Poulain J and Arnaud-Haond S
BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
Bruno A, Aury JM and Engelen S
Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms
Bulankova P, Sekulic M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna-Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, Bowler C, Vyverman W, Vandepoele K and De Veylder L
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea
Castelle CJ, Meheust R, Jaffe AL, Seitz K, Gong XZ, Baker BJ and Banfield JF
Environmental vulnerability of the global ocean epipelagic plankton community interactome
Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, Babin M, Iudicone D, Jaillon O, Karsenti E, Wincker P, Karp-Boss L, Sullivan MB, Bowler C, de Vargas C, Eveillard D and Tara Oceans C
Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity
Cheng JG, Jacquin J, Conan P, Pujo-Pay M, Barbe V, George M, Fabre P, Bruzaud S, Ter Halle A, Meistertzheim AL and Ghiglione JF
Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids
Clavel P, Dumoncel J, Sarkissian CD, Seguin-Orlando A, Calviere-Tonasso L, Schiavinato S, Chauvey L, Perdereau A, Aury JM, Wincker P, Onar V, Clavel B, Lepetz S, Braga J and Orlando L
The NANOTUMOR consortium - Towards the Tumor Cell Atlas
Colin F, Schauer K, Hamiche A, Martineau P, Borg JP, Bednar J, Bertolin G, Camoin L, Collette Y, Dimitrov S, Fournier I, Hyenne V, Mendoza-Parra MA, Morelli X, Ronde P, Sumara I, Tramier M, Schultz P and Goetz JG
Sequence-independent RNA sensing and DNA targeting by a split domain CRISPR-Cas12a gRNA switch
Collins SP, Rostain W, Liao CY and Beisel CL
First Direct Evidence of Interpartner Hydride/Deuteride Exchanges for Stored Sodiated Arginine/Fructose-6-phosphate Complex Anions within Salt-Solvated Structures
Darii E, Gimbert Y, Alves S, Damont A, Perret A, Woods AS, Fenaille F and Tabet JC
Sequence diversity and evolution of a group of iflaviruses associated with ticks
Daveu R, Hervet C, Sigrist L, Sassera D, Jex A, Labadie K, Aury JM, Plantard O and Rispe C
Microbiological versus Chemical Reductive Sulfidation: An Experimental and Theoretical Study
Della-Negra O, de Bonneville BL, Chaussonnerie S, Le Paslier D, Frison G and Saaidi PL
Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean
Delmont TO
Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean
Delmont TO, Karlusich JJP, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P and Pelletier E
VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
Denoyelle L, Talouarn E, Bardou P, Colli L, Alberti A, Danchin C, Del Corvo M, Engelen S, Orvain C, Palhiere I, Rupp R, Sarry J, Salavati M, Amills M, Clark E, Crepaldi P, Faraut T, Masiga CW, Pompanon F, Rosen BD, Stella A, Van Tassell CP, Tosser-Klopp G and VarGoats C
A community perspective on the concept of marine holobionts: current status, challenges, and future directions
Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cardenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachoni CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, Lathier FH, Medina M, Marzinelli EM, Morganti TM, Pons LN, Prado S, Pintado J, Saha M, selosse MA, Skillings D, Stock W, Sunagawa S, Toulza E, Vorobev A, Leblanc C and Not F
Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis
Dong N, Bandura J, Zhang ZL, Wang Y, Labadie K, Noel B, Davison A, Koene JM, Sun HS, Coutellec MA and Feng ZP
Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes
Dorrell RG, Villain A, Perez-Lamarque B, de Kerdrel GA, McCallum G, Watson AK, Ait-Mohamed O, Alberti A, Corre E, Frischkorn KR, Karlusich JJP, Pelletier E, Morlon H, Bowler C and Blanc G
NAD(P)H-Dependent Enzymes for Reductive Amination: Active Site Description and Carbonyl-Containing Compound Spectrum
Ducrot L, Bennett M, Grogan G and Vergne-Vaxelaire C
Community-led, integrated, reproducible multi-omics with anvi'o
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen OC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjodin A, Scott JJ, Vazquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO and Willis AD
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Farhat S, Le P, Kayal E, Noel B, Bigeard E, Corre E, Maumus F, Florent I, Alberti A, Aury JM, Barbeyron T, Cai RB, Da Silva C, Istace B, Labadie K, Marie D, Mercier J, Rukwavu T, Szymczak J, Tonon T, Alves-de-Souza C, Rouze P, van de Peer Y, Wincker P, Rombauts S, Porcel BM and Guillou L
Giant viruses and the origin of eukaryotic RNA polymerases
Forterre P and Gaia M
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes
Garczarek L, Guyet U, Dore H, Farrant GK, Hoebeke M, Brillet-Gueguen L, Bisch A, Ferrieux M, Siltanen J, Corre E, Le Corguille G, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury JM, Wincker P, Scanlan DJ and Partensky F
One Step Forward in Exploration of Class II Pyruvate Aldolases Nucleophile and Electrophile Substrate Specificity
Gastaldi C, Tagne RN, Laurent V, Helaine V, Petit JL, Traikia M, de Berardinis V, Lemaire M and Guerard-Helaine C
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Gauthier J, Boulain H, van Vugt J, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagne N, Boulogne I, Sabeti-Azad M, Maibeche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Consoli FL, Dupas S, Hua-Van A, Le Goff G, Bezier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA and Drezen JM
Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
Gay EJ, Soyer JL, Lapalu N, Linglin J, Fudal I, Da Silva C, Wincker P, Aury JM, Cruaud C, Levrel A, Lemoine J, Delourme R, Rouxel T and Balesdent MH
Biocatalysed synthesis of chiral amines: continuous colorimetric assays for mining amine-transaminases
Gourbeyre L, Heuson E, Charmantray F, Helaine V, Debard A, Petit JL, de Berardinis V and Gefflaut T
Population genomics of apricots unravels domestication history and adaptive events
Groppi A, Liu S, Cornille A, Decroocq S, Bui QT, Tricon D, Cruaud C, Arribat S, Belser C, Marande W, Salse J, Huneau C, Rodde N, Rhalloussi W, Cauet S, Istace B, Denis E, Carrere S, Audergon JM, Roch G, Lambert P, Zhebentyayeva T, Liu WS, Bouchez O, Lopez-Roques C, Serre RF, Debuchy R, Tran J, Wincker P, Chen XL, Petriacq P, Barre A, Nikolski M, Aury JM, Abbott AG, Giraud T and Decroocq V
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Guo JR, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitua MC, Vik D, Sullivan MB and Roux S
Microbial Transformation of Chlordecone and Two Transformation Products Formed During in situ Chemical Reduction
Hellal J, Saaidi PL, Bristeau S, Crampon M, Muselet D, Della-Negra O, Mauffret A, Mouvet C and Joulian C
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Istace B, Belser C, Falentin C, Labadie K, Boideau F, Deniot G, Maillet L, Cruaud C, Bertrand L, Chevre AM, Wincker P, Rousseau-Gueutin M and Aury JM
Microbial Diversity and Activity During the Biodegradation in Seawater of Various Substitutes to Conventional Plastic Cotton Swab Sticks
Jacquin J, Callac N, Cheng JG, Giraud C, Gorand Y, Denoual C, Pujo-Pay M, Conan P, Meistertzheim AL, Barbe V, Bruzaud S and Ghiglione JF
From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi
Joly P, Calteau A, Wauquier A, Dumas R, Beuvin M, Vallenet D, Crovadore J, Cochard B, Lefort F and Berthon JY
Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont TO, Gaia M, Henry N, Hernandez-Velazquez R, Nguyen CH, Mamitsuka H, Forterre P, Jaillon O, de Vargas C, Sullivan MB, Suttle CA, Guidi L and Ogata H
Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
Karlusich JJP, Pelletier E, Lombard F, Carsique M, Dvorak E, Colin S, Picheral M, Cornejo-Castillo FM, Acinas SG, Pepperkok R, Karsenti E, de Vargas C, Wincker P, Bowler C and Foster RA
Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton
Kijima S, Delmont TO, Miyazaki U, Gaia M, Endo H and Ogata H
Comparative genomics reveals new functional insights in uncultured MAST species
Labarre A, Lopez-Escard D, Latorre F, Leonard G, Bucchini F, Obiol A, Cruaud C, Sieracki ME, Jaillon O, Wincker P, Vandepoele K, Logares R and Massana R
Niche adaptation promoted the evolutionary diversification of tiny ocean predators
Latorre F, Deutschmann IM, Labarre A, Obiol A, Krabberod AK, Pelletier E, Sieracki ME, Cruaud C, Jaillon O, Massana R and Logares R
Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection
Le Luyer J, Schull Q, Auffret P, Lopez P, Crusot M, Belliard C, Basset C, Carradec Q, Poulain J, Planes S and Saulnier D
Historical management of equine resources in France from the Iron Age to the Modern Period
Lepetz S, Clavel B, Alioglu D, Chauvey L, Schiavinato S, Tonasso-Calviere L, Liu XX, Fages A, Khan N, Seguin-Orlando A, Sarkissian CD, Clavel P, Estrada O, Gaunitz C, Aury JM, Barme M, Boulbes N, Bourgois A, Decanter F, Foucras S, Frere S, Gardeisen A, Jouanin G, Mela C, Morand N, Espinet AN, Perdereau A, Putelat O, Riviere J, Robin O, Salin M, Valenzuela-Lamas S, Vallet C, Yvinec JH, Wincker P and Orlando L
The origins and spread of domestic horses from the Western Eurasian steppes
Librado P, Khan N, Fages A, Kusliy MA, Suchan T, Tonasso-Calviere L, Schiavinato S, Alioglu D, Fromentier A, Perdereau A, Aury JM, Gaunitz C, Chauvey L, Seguin-Orlando A, Sarkissian CD, Southon J, Shapiro B, Tishkin AA, Kovalev AA, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Seregely T, Klassen L, Iversen R, Bignon-Lau O, Bodu P, Olive M, Castel JC, Boudadi-Maligne M, Alvarez N, Germonpre M, Hoyo MMD, Wilczynski J, Pospula S, Lasota-Kus A, Tunia K, Nowak M, Rannamae E, Saarma U, Boeskorov G, Lougas L, Kysely R, Peske L, Balasescu A, Dumitrascu V, Dobrescu R, Gerber D, Kiss V, Szecsenyi-Nagy A, Mende BG, Gallina Z, Somogyi K, Kulcsar G, Gal E, Bendrey R, Allentoft ME, Sirbu G, Dergachev V, Shephard H, Tomadini N, Grouard S, Kasparov A, Basilyan AE, Anisimov MA, Nikolskiy PA, Pavlova EY, Pitulko V, Brem G, Wallner B, Schwall C, Keller M, Kitagawa K, Bessudnov AN, Bessudnov A, Taylor W, Magail J, Gantulga JO, Bayarsaikhan J, Erdenebaatar D, Tabaldiev K, Mijiddorj E, Boldgiv B, Tsagaan T, Pruvost M, Olsen S, Makarewicz CA, Lamas SV, Canadell SA, Espinet AN, Iborra MP, Garrido JL, Gonzalez ER, Celestino S, Olaria C, Arsuaga JL, Kotova N, Pryor A, Crabtree P, Zhumatayev R, Toleubaev A, Morgunova NL, Kuznetsova T, Lordkipanize D, Marzullo M, Prato O, Gianni GB, Tecchiati U, Clavel B, Lepetz S, Davoudi H, Mashkour M, Berezina NY, Stockhammer PW, Krause J, Haak W, Morales-Muniz A, Benecke N, Hofreiter M, Ludwig A, Graphodatsky AS, Peters J, Kiryushin KY, Iderkhangai TO, Bokovenko NA, Vasiliev SK, Seregin NN, Chugunov KV, Plasteeva NA, Baryshnikov GF, Petrova E, Sablin M, Ananyevskaya E, Logvin A, Shevnina I, Logvin V, Kalieva S, Loman V, Kukushkin I, Merz I, Merz V, Sakenov S, Varfolomeyev V, Usmanova E, Zaibert V, Arbuckle B, Belinskiy AB, Kalmykov A, Reinhold S, Hansen S, Yudin AI, Vybornov AA, Epimakhov A, Berezina NS, Roslyakova N, Kosintsev PA, Kuznetsov PF, Anthony D, Kroonen GJ, Kristiansen K, Wincker P, Outram A and Orlando L
Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life
Meheust R, Huang S, Rivera-Lugo R, Banfield JF and Light SH
Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10(-/-) Mice
Miyoshi J, Miyoshi S, Delmont TO, Cham C, Lee STM, Sakatani A, Yang KR, Shan Y, Kennedy M, Kiefl E, Yousef M, Crosson S, Sogin M, Antonopoulos DA, Eren AM, Leone V and Chang EB
Inferring biologically relevant molecular tissue substructures by agglomerative clustering of digitized spatial transcriptomes with multilayer
Moehlin J, Mollet B, Colombo BM and Mendoza-Parra MA
Bacterial Epigenomics: Coming of Age COMMENT
Oliveira PH
Segregation Distortion for Male Parents in High Density Genetic Maps from Reciprocal Crosses between Two Self-Incompatible Cultivars Confirms a Gametophytic System for Self-Incompatibility in Citrus
Ollitrault P, Ahmed D, Costantino G, Evrard JC, Cardi C, Mournet P, Perdereau A and Froelicher Y
Estimating the Travel Time and the Most Likely Path from Lagrangian Drifters
O'Malley M, Sykulski AM, Laso-Jadart R and Madoui MA
AI-based mobile application to fight antibiotic resistance
Pascucci M, Royer G, Adamek J, Al Asmar M, Aristizabal D, Blanche L, Bezzarga A, Boniface-Chang G, Brunner A, Curel C, Dulac-Arnold G, Fakhri RM, Malou N, Nordon C, Runge V, Samson F, Sebastian E, Soukieh D, Vert JP, Ambroise C and Madoui MA
Noncanonical DNA polymerization by aminoadenine-based siphoviruses
Pezo V, Jaziri F, Bourguignon PY, Louis D, Jacobs-Sera D, Rozenski J, Pochet S, Herdewijn P, Hatfull GF, Kaminski PA and Marliere P
Phylogenetic signatures of ecological divergence and leapfrog adaptive radiation in Espeletia
Pouchon C, Lavergne S, Fernandez A, Alberti A, Aubert S and Mavarez J
A zero inflated log-normal model for inference of sparse microbial association networks
Prost V, Gazut S and Bruls T
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Rasmussen JA, Villumsen KR, Duchene DA, Puetz LC, Delmont TO, Sveier H, Jorgensen LV, Praebel K, Martin MD, Bojesen AM, Gilbert MTP, Kristiansen K and Limborg MT
Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii
Reynes L, Thibaut T, Mauger S, Blanfune A, Holon F, Cruaud C, Couloux A, Valero M and Aurelle D
Evolutionary origins and species delineation of the two Pyrenean endemics Campanula jaubertiana and C. andorrana (Campanulaceae): evidence for transverse alpine speciation
Roquet C, Smycka J, Alberti A, Boleda M, Coissac E, Denoeud F, Komac B, Lavergne S, Pladevall C and Saez L
O-antigen targeted vaccines against E. coli may be useful in reducing morbidity, mortality and antimicrobial resistance
Royer G, Clermont O, Condamine B, Mercier-Darty M, Laouenan C, Lefort A, Denamur E, de Lastours V, Colibafi and groups S
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period
Royer G, Darty MM, Clermont O, Condamine B, Laouenan C, Decousser JW, Vallenet D, Lefort A, de Lastours V, Denamur E, Grp C and Grp S
Lack of association between colistin resistance and chlorhexidine reduced susceptibility in clinical isolates of Escherichia coli
Royer G, Poirel L, La Combe B, Clermont O, Chau F, Mercier-Darty M, Denamur E, Nordmann P, Ricard JD and Decousser JW
Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications
Royer G, Roisin L, Demontant V, Lo S, Coutte L, Lim P, Pawlotsky JM, Jacquier H, Lepeule R, Rodriguez C and Woerther PL
Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Royo-Llonch M, Sanchez P, Ruiz-Gonzalez C, Salazar G, Pedros-Alio C, Sebastian M, Labadie K, Paoli L, Ibarbalz FM, Zinger L, Churcheward B, Chaffron S, Eveillard D, Karsenti E, Sunagawa S, Wincker P, Karp-Boss L, Bowler C, Acinas SG and Tara Oceans C
Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients
Schauberger C, Glud RN, Hausmann B, Trouche B, Maignien L, Poulain J, Wincker P, Arnaud-Haond S, Wenzhofer F and Thamdrup B
A community resource for paired genomic and metabolomic data mining
Schorn MA, Verhoeven S, Ridder L, Huber F, Acharya DD, Aksenov AA, Aleti G, Moghaddam JA, Aron AT, Aziz S, Bauermeister A, Bauman KD, Baunach M, Beemelmanns C, Beman JM, Berlanga-Clavero MV, Blacutt AA, Bode HB, Boullie A, Brejnrod A, Bugni TS, Calteau A, Cao L, Carrion VJ, Castelo-Branco R, Chanana S, Chase AB, Chevrette MG, Costa-Lotufo LV, Crawford JM, Currie CR, Cuypers B, Dang T, de Rond T, Demko AM, Dittmann E, Du C, Drozd C, Dujardin JC, Dutton RJ, Edlund A, Fewer DP, Garg N, Gauglitz JM, Gentry EC, Gerwick L, Glukhov E, Gross H, Gugger M, Matus DGG, Helfrich EJN, Hempel BF, Hur JS, Iorio M, Jensen PR, Kang KB, Kaysser L, Kelleher NL, Kim CS, Kim KH, Koester I, Konig GM, Leao T, Lee SR, Lee YY, Li XJ, Little JC, Maloney KN, Mannle D, Martin HC, McAvoy AC, Metcalf WW, Mohimani H, Molina-Santiago C, Moore BS, Mullowney MW, Muskat M, Nothias LF, O'Neill EC, Parkinson EI, Petras D, Piel J, Pierce EC, Pires K, Reher R, Romero D, Roper MC, Rust M, Saad H, Saenz C, Sanchez LM, Sorensen SJ, Sosio M, Sussmuth RD, Sweeney D, Tahlan K, Thomson RJ, Tobias NJ, Trindade-Silva AE, van Wezel GP, Wang MX, Weldon KC, Zhang F, Ziemert N, Duncan KR, Crusemann M, Rogers S, Dorrestein PC, Medema MH and van der Hooft JJJ
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Sellis D, Guerin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, Duret L and Duharcourt S
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Simion P, Narayan J, Houtain A, Derzelle A, Baudry L, Nicolas E, Arora R, Cariou M, Cruaud C, Gaudray FR, Gilbert C, Guiglielmoni N, Hespeels B, Kozlowski DKL, Labadie K, Limasset A, Lliros M, Marbouty M, Terwagne M, Virgo J, Cordaux R, Danchin EGJ, Hallet B, Koszul R, Lenormand T, Flot JF and Van Doninck K
A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes
Sleiman D, Garcia PS, Lagune M, Loc'h J, Haouz A, Taib N, Rothlisberger P, Gribaldo S, Marliere P and Kaminski PA
Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology
Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TLP, Erkens RHJ, Sauquet H, Pirie MD, Thomas DC and Cao KF
Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing
Studer F, Petit JL, Engelen S and Mendoza-Parra MA
Male Differentiation in the Marine Copepod Oithona nana Reveals the Development of a New Nervous Ganglion and Lin12-Notch-Repeat Protein-Associated Proteolysis
Sugier K, Laso-Jadart R, Vacherie B, Kafer J, Bertrand L, Labadie K, Martins N, Orvain C, Petit E, Wincker P, Jamet JL, Alberti A and Madoui MA
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
Sun ZY, Vaisvila R, Hussong LM, Yan B, Baum C, Saleh L, Samaranayake M, Guan SX, Dai N, Correa IR, Pradhan S, Davis TB, Evans TC and Ettwiller LM
Nitrilase immobilization and transposition from a micro-scale batch to a continuous process increase the nicotinic acid productivity
Teepakorn C, Zajkoska P, Cwicklinski G, De Berardinis V, Zaparucha A, Nonglaton G and Anxionnaz-Minvielle Z
Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean-Atlantic Gradient
Trouche B, Brandt MI, Belser C, Orejas C, Pesant S, Poulain J, Wincker P, Auguet JC, Arnaud-Haond S and Maignien L
Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean
Wang SZ, Cruaud C, Aury JM, Vallenet D, Poulain J, Vacherie B, Zaparucha A and Vergne-Vaxelaire C
Late Quaternary dynamics of Arctic biota from ancient environmental genomics
Wang YC, Pedersen MW, Alsos IG, De Sanctis B, Racimo F, Prohaska A, Coissac E, Owens HL, Merkel MKF, Fernandez-Guerra A, Rouillard A, Lammers Y, Alberti A, Denoeud F, Money D, Ruter AH, McColl H, Larsen NK, Cherezova AA, Edwards ME, Fedorov GB, Haile J, Orlando L, Vinner L, Korneliussen TS, Beilman DW, Bjork AA, Cao JL, Dockter C, Esdale J, Gusarova G, Kjeldsen KK, Mangerud J, Rasic JT, Skadhauge B, Svendsen JI, Tikhonov A, Wincker P, Xing YC, Zhang YB, Froese DG, Rahbek C, Nogues DB, Holden PB, Edwards NR, Durbin R, Meltzer DJ, Kjaer KH, Moller P and Willerslev E
Hijacking, arms race, GMOs and pesticides
Weissenbach J and Dujon B
Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy
Woo ACC, Gaia M, Guglielmini J, Da Cunha V and Forterre P
Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench
Zhang WJ, Zhang C, Zhou SY, Li XG, Mangenot S, Fouteau S, Guerin T, Qi XQ, Yang J, Bartlett DH and Wu LF
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Puscas M, Roquet C, Hurdu BI, Thuiller W, Zimmermann NE, Hollingsworth PM and Coissac E
Plastome comparative genomics in maples resolves the infrageneric backbone relationships
Areces-Berazain F, Wang YX, Hinsinger DD and Strijk JS
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D and Fonknechten N
panRGP: a pangenome-based method to predict genomic islands and explore their diversity
Bazin A, Gautreau G, Medigue C, Vallenet D and Calteau A
Continued Adaptation of C-4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses
Bianconi ME, Hackel J, Vorontsova MS, Alberti A, Arthan W, Burke SV, Duvall MR, Kellogg EA, Lavergne S, McKain MR, Meunier A, Osborne CP, Traiperm P, Christin PA and Besnard G
A comprehensive resource for retrieving, visualizing, and integrating functional genomics data
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H and Mendoza-Parra MA
Large scale active-learning-guided exploration for in vitro protein production optimization
Borkowski O, Koch M, Zettor A, Pandi A, Batista AC, Soudier P and Faulon JL
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G and Brosch R
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
Boutte J, Maillet L, Chaussepied T, Letort S, Aury JM, Belser C, Boideau F, Brunet A, Coriton O, Deniot G, Falentin C, Huteau V, Lode-Taburel M, Morice J, Trotoux G, Chevre AM, Rousseau-Gueutin M and de Carvalho JF
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities
Brandt MI, Trouche B, Henry N, Liautard-Haag C, Maignien L, de Vargas C, Wincker P, Poulain J, Zeppilli D and Arnaud-Haond S
Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean
Busseni G, Caputi L, Piredda R, Fremont P, Mele BH, Campese L, Scalco E, de Vargas C, Bowler C, d'Ovidio F, Zingone A, d'Alcala MR and Iudicone D
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cai RB, Kayal E, Alves-de-Souza C, Bigeard E, Corre E, Jeanthon C, Marie D, Porcel BM, Siano R, Szymczak J, Wolf M and Guillou L
Metagenomic Mining for Amine Dehydrogenase Discovery
Caparco AA, Pelletier E, Petit JL, Jouenne A, Bommarius BR, de Berardinis V, Zaparucha A, Champion JA, Bommarius AS and Vergne-Vaxelaire C
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec Q, Poulain J, Boissin E, Hume BCC, Voolstra CR, Ziegler M, Engelen S, Cruaud C, Planes S and Wincker P
1 - 99Next