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Lammers Y, Pellissier L, Alm T, Brathen KA, Coissac E, Merkel MKF, Alberti A, Denoeud F, Bakke J and PhyloNorway C | | | | Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding | Aury JM, Engelen S, Istace B, Monat C, Lasserre-Zuber P, Belser C, Cruaud C, Rimbert H, Leroy P, Arribat S, Dufau I, Bellec A, Grimbichler D, Papon N, Paux E, Ranoux M, Alberti A, Wincker P and Choulet F | | | | Structure and Mutation of the Native Amine Dehydrogenase MATOUAmDH2 | Bennett M, Ducrot L, Vergne-Vaxelaire C and Grogan G | | | | Epigenomic and structural events preclude recombination in Brassica napus | Boideau F, Richard G, Coriton O, Huteau V, Belser C, Deniot G, Eber F, Falentin C, de Carvalho JF, Gilet M, Lode-Taburel M, Maillet L, Morice J, Trotoux G, Aury JM, Chevre AM and Rousseau-Gueutin M | | | | Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection | Canaguier A, Guilbaud R, Denis E, Magdelenat G, Belser C, Istace B, Cruaud C, Wincker P, Le Paslier MC, Faivre-Rampant P and Barbe V | | | | Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment | Carbonne C, Labadie K, Cruaud C, Brun E, Barbe V and Monnet C | | | | Chelonus inanitus bracovirus encodes lineage-specific proteins and truncated immune IkappaB-like factors | Cerqueira de Araujo A, Josse T, Sibut V, Urabe M, Asadullah A, Barbe V, Nakai M, Huguet E, Periquet G and Drezen JM | | | | A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source | Chaignaud P, Gruffaz C, Borreca A, Fouteau S, Kuhn L, Masbou J, Rouy Z, Hammann P, Imfeld G, Roche D and Vuilleumier S | | | | Biodegradability under marine conditions of bio-based and petroleum-based polymers as substitutes of conventional microparticles | Cheng J, Eyheraguibel B, Jacquin J, Pujo-Pay M, Conan P, Barbe V, Hoypierres J, Deligey G, Halle AT, Bruzaud S, Ghiglione J-F and Meistertzheim A-L | | | | Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France | Clavel B, Lepetz S, Chauvey L, Schiavinato S, Tonasso-Calviere L, Liu XX, Fages A, Khan N, Seguin-Orlando A, Sarkissian CD, Clavel P, Estrada O, Alioglu D, Gaunitz C, Aury JM, Barme M, Bodu P, Olive M, Bignon-Lau O, Castel JC, Boudadi-Maligne M, Boulbes N, Bourgois A, Decanter F, Foucras S, Frere S, Gardeisen A, Jouanin G, Mela C, Morand N, Espinet AN, Perdereau A, Putelat O, Riviere J, Robin O, Salin M, Valenzuela-Lamas S, Vallet C, Yvinec JH, Wincker P and Orlando L | | | | Evidence of coupled autotrophy and heterotrophy on plastic biofilms and its influence on surrounding seawater | Conan P, Philip L, Ortega-Retuerta E, Odobel C, Duran C, Pandin C, Giraud C, Meistertzheim AL, Barbe V, Ter Hall A, Pujo-Pay M and Ghiglione JF | | | | Patterns of eukaryotic diversity from the surface to the deep-ocean sediment | Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita MA, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C and Pawlowski J | | | | Selection drives convergent gene expression changes during transitions to co-sexuality in haploid sexual systems | Cossard GG, Godfroy O, Nehr Z, Cruaud C, Cock JM, Lipinska AP and Coelho SM | | | | In vitro Applications of the Terpene Mini-Path 2.0 | Couillaud J, Amouric A, Courvoisier-Dezord E, Leydet L, Schweitzer N, Rosso MN, Hage H, Loussouarn-Yvon M, Vincentelli R, Petit JL, de Berardinis V, Attolini M, Maresca M, Duquesne K and Iacazio G | | | | The expanding Asgardÿarchaea and their elusive relationships with Eukarya | Da Cunha V, Ga‹a M and Forterre P | | | | Giant Viruses Encode Actin-Related Proteins | Da Cunha V, Gaia M, Ogata H, Jaillon O, Delmont TO and Forterre P | | | | Genomic 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Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam | Fouteau S, Van VB, Rouy Z, Beraud M, Cruaud C, Cayol JL, Chifflet S, Van TC, The TP, Vallenet D, Oliveira PH, Mari X and Pradel N | | | | Restructuring of plankton genomic biogeography in the surface ocean under climate change | Fremont P, Gehlen M, Vrac M, Leconte J, Delmont TO, Wincker P, Iudicone D and Jaillon O | | | | Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria | Grebert T, Garczarek L, Daubin V, Humily F, Marie D, Ratin M, Devailly A, Farrant GK, Mary I, Mella-Flores D, Tanguy G, Labadie K, Wincker P, Kehoe DM and Partensky F | | | | Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence | Gu‚rin N, Ciccarella M, Flamant E, Fr‚mont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K, Cruaud C, Romac S, Bachy C, Gachenot M, Pelletier E, Alberti A, Jaillon O, Wincker P, Aury J-M and Carradec 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Berger A, Dubois I, Bouzon M, D”ring V, Noor E, Bar-Even A and Lindner SN | | | | Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV-1 | Jacoby C, Ebenau-Jehle C, Saum K, Jehmlich N, von Bergen M, Bruls T and Boll M | | | | Synthesis of Chiral Amines via a Bi-Enzymatic Cascade Using an Ene-Reductase and Amine Dehydrogenase | Jongkind EPJ, Fossey-Jouenne A, Mayol O, Zaparucha A, Vergne-Vaxelaire C and Paul CE | | | | A robust approach to estimate relative phytoplankton cell abundances from metagenomes | Karlusich JJP, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C and Bowler C | | | | Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans | Lang-Yona N, Flores JM, Haviv R, Alberti A, Poulain J, Belser C, Trainic M, Gat D, Ruscheweyh HJ, Wincker P, Sunagawa S, Rudich Y, Koren I and Vardi A | | | | Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei | Lu YAT, Ruault S, Daguin-Thiebaut C, Castel J, Bierne N, Broquet T, Wincker P, Perdereau A, Arnaud-Haond S, Gagnaire PA, Jollivet D, Hourdez S and Bonhomme F | | | | The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France | Marin J, Clermont O, Royer G, Mercier-Darty M, Decousser JW, Tenaillon O, Denamur E and Blanquart F | | | | Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea | Martin G, Cottin A, Baurens FC, Labadie K, Hervouet C, Salmon F, Paulo-de-la-Reberdiere N, Van den Houwe I, Sardos J, Aury JM, D'Hont A and Yahiaoui N | | | | Genome-Wide Transcription Start Sites Mapping in Methylorubrum Grown with Dichloromethane and Methanol | Maucourt B, Roche D, Chaignaud P, Vuilleumier S and Bringel F | | | | Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups | Meheust R, Castelle CJ, Jaffe AL and Banfield JF | | | | A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs | Mishra B, Ulaszewski B, Meger J, Aury J-M, Bodenes C, Lesur-Kupin I, Pfenninger M, Da Silva C, Gupta DK, Guichoux E, Heer K, Lalanne C, Labadie K, Opgenoorth L, Ploch S, Le Provost G, Salse J, Scotti I, Wotzel S, Plomion C, Burczyk J and Thines M | | | | Magnetosome proteins belong to universal protein families involved in many cell processes | Monteil CL, Vallenet D, Schuler D and Lefevre CT | | | | Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros | Nef C, Madoui MA, Pelletier E and Bowler C | | | | A 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ME, Edwards NR, Esdale J, Fedorov GB, Fernandez-Guerra A, Froese DG, Gusarova G, Haile J, Holden PB, Kjeldsen KK, Kjaer KH, Korneliussen TS, Lammers Y, Larsen NK, Macleod R, Mangerud J, McColl H, Merkel MKF, Money D, Moller P, Nogues-Bravo D, Orlando L, Owens HL, Pedersen MW, Racimo F, Rahbek C, Rasic JT, Rouillard A, Ruter AH, Skadhauge B, Svendsen JI, Tikhonov A, Vinner L, Wincker P, Xing Y, Zhang Y, Meltzer DJ and Willerslev E | | | | Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome | Zayed AA, Wainaina JM, Dominguez-Huerta G, Pelletier E, Guo J, Mohssen M, Tian F, Pratama AA, Bolduc B, Zablocki O, Cronin D, Solden L, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Ruscheweyh HJ, Salazar G, Shatoff E, Tara Oceans Coordinatorsdouble d, Bundschuh R, Fredrick K, Kubatko LS, Chaffron S, Culley AI, Sunagawa S, Kuhn JH, Wincker P, Sullivan MB, Acinas SG, Babin M, Bork P, Boss E, Bowler C, Cochrane G, de Vargas C, Gorsky G, 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Human Microglia Differentiation Protocols | Aubert A, Studer F, Colombo BM and Mendoza-Parra MA | | | | Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads | | | | | Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA Delivery | Baladi T, Nilsson JR, Gallud A, Celauro E, Gasse C, Levi-Acobas F, Sarac I, Hollenstein MR, Dahlen A, Esbjorner EK and Wilhelmsson LM | | | | Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes | Baum C, Lin YC, Fomenkov A, Anton BP, Chen LX, Yan B, Evans TC, Roberts RJ, Tolonen AC and Ettwiller L | | | | Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing | Belser C, Baurens FC, Noel B, Martin G, Cruaud C, Istace B, Yahiaoui N, Labadie K, Hribova E, Dolezel J, Lemainque A, Wincker P, D'Hont A and Aury JM | | | | Purification and Characterization of Nit, a Robust Thermostable Nitrilase From Parabukholderia phymatum | Bessonnet T, Mariage A, Petit JL, Pellouin V, Debard A, Zaparucha A, Vergne-Vaxelaire C and de Berardinis V | | | | Change in Cofactor Specificity of Oxidoreductases by Adaptive Evolution of an Escherichia coli NADPH-Auxotrophic Strain | Bouzon M, Doring V, Dubois I, Berger A, Stoffel GMM, Ramirez LC, Meyer SN, Foure M, Roche D, Perret A, Erb TJ, Bar-Even A and Lindner SN | | | | Macroscale patterns of oceanic zooplankton composition and size structure | Brandao MC, Benedetti F, Martini S, Soviadan YD, Irisson JO, Romagnan JB, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp-Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F and Tara Oceans Consortium C | | | | Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA | Brandt MI, Pradillon F, Trouche B, Henry N, Liautard-Haag C, Cambon-Bonavita MA, Cueff-Gauchard V, Wincker P, Belser C, Poulain J, Arnaud-Haond S and Zeppilli D | | | | Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding | Brandt MI, Trouche B, Quintric L, Gunther B, Wincker P, Poulain J and Arnaud-Haond S | | | | Editorial: Synthetic Microbial Ecology | Bruls T, Baumdicker F and Smidt H | | | | BoardION: real-time monitoring of Oxford Nanopore sequencing instruments | Bruno A, Aury JM and Engelen S | | | | Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms | Bulankova P, Sekulic M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna-Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, Bowler C, Vyverman W, Vandepoele K and De Veylder L | | | | Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea | Castelle CJ, Meheust R, Jaffe AL, Seitz K, Gong XZ, Baker BJ and Banfield JF | | | | Environmental vulnerability of the global ocean 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